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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G163700.3.p | ||||||||
Common Name | Sb08g021000, SORBIDRAFT_08g021000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 476aa MW: 50384.7 Da PI: 5.1033 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.4 | 9.3e-17 | 292 | 338 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Sobic.008G163700.3.p 292 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 338 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.80E-19 | 285 | 342 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-21 | 285 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-21 | 286 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.559 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-14 | 292 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-19 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MRCSHSLTER QPAMNQYISD WSGAMGDTFA LPLGLGGGGG GGEDDDGLIE LMWCNGHVVM 60 QSQAAPRSNK PPRPDKAAPA AAAVQEDDDA AAQAWFQEQY PVEEEDPLER DDLFSELFGE 120 AQAAVDGARG ACSCKEEAEE DARQSISGMM PPPPPMRPRD DKACTGDASL DAATATEGAE 180 SSMLTIGSSF CGSNHVQTTT GGAGTDVVVV VARARGAATD TSSATRSRSC TTRNEHPCPG 240 AAAAAAAAHR SGKRKQSVDA TDAEDVEFES ADVTCEPAHK TATAKRRRAA EVHNLSERRR 300 RDRINEKMKA LQELIPHCNK TDKASMLDEA IEYLKSLQLQ LQMMWMGGGM AAAAAPVVFP 360 AGVHQYMQRM VAAGPAPPPH MASMPAMPFM APPPAVQAPP LPDLYARYLA VDHHLPPLPP 420 MVASPYTSAM GFYQRQNPAL PPLPAVPAPA PSPSDGILHK KYENCGKPEI QGITG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 285 | 300 | RRRAAEVHNLSERRRR |
2 | 296 | 301 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G163700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302237.1 | 0.0 | transcription factor PIF4 isoform X3 | ||||
TrEMBL | A0A1B6PE59 | 0.0 | A0A1B6PE59_SORBI; Uncharacterized protein | ||||
STRING | Sb08g021000.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-23 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G163700.3.p |
Entrez Gene | 8070136 |