PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G157100.2.p

Common Name

Sb08g020600, SORBIDRAFT_08g020600

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 318aa MW: 33892.6 Da PI: 4.8301

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G157100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.7	1.6e-15	125	178	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k+ rr+ +NRe+ArrsR+RK+a + Le v L++eN +L k+l ++++++ Sobic.008G157100.2.p 125 AKKMRRMLSNRESARRSRKRKQAHLNDLESQVSRLTSENASLLKRLADMTQKYK 178 6999***********************************999966665555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-16	122	186	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.53	124	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.4E-13	125	178	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-13	126	178	No hit	No description
SuperFamily	SSF57959	3.21E-12	126	177	No hit	No description
CDD	cd14702	3.53E-20	127	177	No hit	No description
PROSITE pattern	PS00036	0	129	144	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	4.9E-26	193	298	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAGGGADDDD VVEVSCGGRG GGDPGAYAAV LKRKLDLYCA AVAKSMEAKS QESSLGYPNS 60 QASDTSQLIS QASFDGDIDG AGLVTNSNVI IEDDDFQGKP TNSGTSKELS DDDGDLEENT 120 DPTNAKKMRR MLSNRESARR SRKRKQAHLN DLESQVSRLT SENASLLKRL ADMTQKYKDA 180 SLDNKNLTVD IETMRRKVNI AEEAVRRLTG TTLMLSTAFD KPMSSTPLSS CASDAASASV 240 AIEDSAKHFL HAPLQSGQMK LDILNAAIPL TSEGIGTKPA SLQRVASLEN LQKRIIGDSM 300 HSETASTFSE PEALADR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	144	RRSRKRK
2	138	145	RRSRKRKQ
3	140	145	SRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.13068	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G157100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042103	0.0	BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds.
GenBank	KJ727504	0.0	KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002442478.1	0.0	light-inducible protein CPRF2 isoform X2
TrEMBL	C5YRE4	0.0	C5YRE4_SORBI; Uncharacterized protein
STRING	Sb08g020600.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7595	29	43
Representative plant	OGRP1839	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	5e-31	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.008G157100.2.p
Entrez Gene	8070110