PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G154100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 316aa    MW: 32893.4 Da    PI: 7.6642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G154100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.3e-15146193355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ah+  E+rRR++iN+++ +L++l+P +      K + a++L ++++Y+ksLq
  Sobic.008G154100.1.p 146 EAHKLTEKRRRHKINERLKTLQQLVPGC-----SKSNQASTLDQTIHYMKSLQ 193
                           58*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.063143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-13146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-15146197No hitNo description
SuperFamilySSF474591.44E-17146208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18146200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MMLLLLLVRG CGGCDNDNAG EATAATAAVP TMGESGSFFA DVVADYYISK PPDVHFDPPS  60
EDEMAAWFGA IVKGEELAGN DGDGGHRLIA DDGGRDAVPA TMETSTETDK KEKVPTTTEG  120
VVMGNKVMKN KAPAGGPSSW RSHHGEAHKL TEKRRRHKIN ERLKTLQQLV PGCSKSNQAS  180
TLDQTIHYMK SLQQQVQAMS VGLAAPAVYP IVQPQCMPPG MPVAMPFPAA HPMVLGGHPP  240
STTMVPFGAT MFQLPYPGAA VMVPAAAAVA PLYPAPAAAP TSTAVAFGDS MSANHSRGSS  300
SRSRSKGRGK GSSSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G154100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.11e-113transcription factor APG
TrEMBLA0A1Z5R7040.0A0A1Z5R704_SORBI; Uncharacterized protein
STRINGSb08g020320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.17e-22phytochrome interacting factor 3-like 5