PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G154000.2.p
Common NameSb08g020300, SORBIDRAFT_08g020300
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 342aa    MW: 36081.5 Da    PI: 6.343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G154000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.4e-16168215355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ahn  E+rRR++iN+++ +L++l+P +      K + a++L ++++Y+ksLq
  Sobic.008G154000.2.p 168 EAHNLTEKRRRHKINERLKTLQQLVPGC-----SKSNQASTLDQTIHYMKSLQ 215
                           58*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-18163227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.545165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-19168222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-16168219No hitNo description
PfamPF000101.3E-13168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-16171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMNNDPDAAG DPWRCCYNNA GEAAATAVPT SGETGSFFAD KAPDYSTDDL FELVWEQEGQ  60
DGGASGPAVS RLRSRRFSNP PPDVRFEPPS EDEMAAWLIS AIVKGDELVC NDDGGRQPMA  120
DDSWDVPMMG TTATATNKKQ KVTPEGKMGT EEMRKAPAGG SSRSHHGEAH NLTEKRRRHK  180
INERLKTLQQ LVPGCSKSNQ ASTLDQTIHY MKSLQHQVQA MSVGLASPAV YPVVQPQCVP  240
PATPVAMPFP AAPMFLGGHP PSTTMMVPFG TTMIPLPHYP AGAVMMPGAA VAPLYPASAP  300
TTTAVAPGDA VSASHLHGFS SRSSSKGSGM GSSSLCQSDR T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G154000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.10.0transcription factor APG
TrEMBLA0A1Z5R7F30.0A0A1Z5R7F3_SORBI; Uncharacterized protein
STRINGSb08g020300.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-20phytochrome interacting factor 3-like 5