PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G153801.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 20224.1 Da PI: 9.6909 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 73 | 121 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ah+ E+rRR +i++++ +L++l+P + p + a++L ++++YIksLq Sobic.008G153801.1.p 73 EAHSLTEKRRRLKIKEKLKTLQQLVPGC---P-NNSNQASTLDQTIRYIKSLQ 121 68*************************8...4.34799**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-15 | 68 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.205 | 70 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-11 | 73 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-13 | 73 | 122 | No hit | No description |
SMART | SM00353 | 4.3E-10 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MASWLFPIVC GAGEEVAGGG DAVVVAGRRA WVVDDDQMVP SGKGLESSSD HKLQEKRKTS 60 STGRGKRSHH HAEAHSLTEK RRRLKIKEKL KTLQQLVPGC PNNSNQASTL DQTIRYIKSL 120 QQHILQAMSG MKPTSVAVCP VVQQAPCLPC WQGGTSVQRD GSWALPSYSS VLPPCFHGFT 180 FTAMQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 83 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G153801.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806978.1 | 8e-30 | putative transcription factor bHLH056 | ||||
TrEMBL | A0A1Z5R713 | 1e-136 | A0A1Z5R713_SORBI; Uncharacterized protein | ||||
STRING | Sb08g020280.1 | 3e-86 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 4e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G153801.1.p |