PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G153600.1.p
Common NameSb08g020270, SORBIDRAFT_08g020270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 372aa    MW: 39291.7 Da    PI: 10.6546
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G153600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31305362359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Sobic.008G153600.1.p 305 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHN 362
                           9*************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-18256301IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.2E-34291363IPR003657WRKY domain
PROSITE profilePS5081130.285298364IPR003657WRKY domain
SuperFamilySSF1182902.62E-27301363IPR003657WRKY domain
SMARTSM007748.1E-39303363IPR003657WRKY domain
PfamPF031064.6E-27305361IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEEVEVANRA AVESCHRVLA LLSQQQDPAL LKSIASETAE ACAKFRKVAA LLGSGSGGGG  60
GCGHARGRFS RRVRPMGLVN QKSPLGSGSG GGGSPLEMMP STAAAAAAVA APSPSTSYAQ  120
MRARLNGVPD SRGLDLACSS SKSGGPHPFG APKLVQPLSV QFQIGNVAHR YPFHQQPPSR  180
QKLQAEMFKR SNSGISLKFE SPSPSGGAAG TMSSARSFMS SLSMDGSMAS LDGKRPFHLV  240
GTPVASDPAD AHRAPKRRCT GRGEDGRGKC ATTGRCHCSK RRKLRIKRSI KVPAISNKIA  300
DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDPAM LIVTYEGEHN  360
HNQLPAQAAQ T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-203003661478Probable WRKY transcription factor 4
2lex_A2e-203003661478Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257RAPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G153600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337780.0BT033778.1 Zea mays full-length cDNA clone ZM_BFc0124G22 mRNA, complete cds.
GenBankBT0543090.0BT054309.1 Zea mays full-length cDNA clone ZM_BFb0279C06 mRNA, complete cds.
GenBankBT0843360.0BT084336.1 Zea mays full-length cDNA clone ZM_BFb0102N04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443483.10.0probable WRKY transcription factor 74
SwissprotQ93WU69e-93WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLC5YRA70.0C5YRA7_SORBI; Uncharacterized protein
STRINGSb08g020270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.16e-64WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]