PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.008G147800.1.p | ||||||||
Common Name | Sb08g019780, SORBIDRAFT_08g019780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 34396.9 Da PI: 4.8381 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.9e-11 | 242 | 282 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Sobic.008G147800.1.p 242 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 282 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-14 | 232 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.799 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 235 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 238 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-12 | 241 | 286 | No hit | No description |
Pfam | PF00010 | 4.1E-8 | 242 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MEAGGLITEV GWTEFDFLSH GEESEAMMAQ LLGAFPSHAD EGQHELLHWP DQASNAYSDS 60 IPPSCGGYYF LSNSNEALGS SSCTAPTDAL PFQEEHGAGA AEYLDVTANH SFNCYGNGDP 120 SYEDLDDPMS VSMLGSVSTA PDKSKRKHMV EEHDGQTQKR GRKSARNVGE AKRAKRAKKS 180 GDEDSSMAIR NGSPTSCCTS DSDSNASLES ADGDGDADAR RPKGKGRAGR SATTEPQSIY 240 ARKRRERINE RLKILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIRLLSS DDTWMYAPIA 300 YNGMNIGIGI DLNMDR* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.008G147800.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY661659 | 0.0 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443458.1 | 0.0 | transcription factor bHLH85 | ||||
Refseq | XP_021301980.1 | 0.0 | transcription factor bHLH85 | ||||
Refseq | XP_021301981.1 | 0.0 | transcription factor bHLH85 | ||||
Swissprot | Q84WK0 | 1e-50 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | C5YQV8 | 0.0 | C5YQV8_SORBI; Uncharacterized protein | ||||
STRING | Sb08g019780.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4310 | 32 | 70 | Representative plant | OGRP1048 | 14 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 7e-45 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.008G147800.1.p |
Entrez Gene | 8074300 |
Publications ? help Back to Top | |||
---|---|---|---|
|