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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.008G145000.2.p |
Common Name | Sb08g019530, SORBIDRAFT_08g019530 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 425aa MW: 44502 Da PI: 4.2601 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.008G145000.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.9 | 6e-19 | 69 | 118 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g
Sobic.008G145000.2.p 69 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 118
789******.7*********33....35**********************99998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MSMARKRKAS DDSAVDVDGN DDVLHSPPPL LASTDACAWA SSGGGGMAAA VAAAAAAAQQ 60 QQQQRGRKRF VGVRQRPSGR WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN 120 TRTNFWPRPS PASSVAVAAA AHPAPPPPTP TPTPAAASVS PTQAPALPSK VTNLLLLRLR 180 ARNNDQQQVL NAAPARQQEA TALLQGPLCA EPYSGGGEEC AFQVDDFLSY DCGSDENSSQ 240 EIDDEEEEEE EEEEEELDFQ FMDQQAASPA AGCEGGGLCS PFEVVAAELG GAVEAGGGEP 300 ATAVHELMMS RMDYERKISA SLYALSGVSE CLRMRLGAAA GGGHAVRDQL SGLREACRKK 360 QRQTVQREQE PSTETAEDVK PSREECSPGG GGGAPEATSS SSSEASDGDG DVLLWSSLDL 420 APIC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT067109 | 0.0 | BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds. |
GenBank | JX469920 | 0.0 | JX469920.1 Zea mays subsp. mays clone UT3176 AP2-EREBP-type transcription factor mRNA, partial cds. |