PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G116800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 24840.3 Da PI: 10.3966 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.6 | 2.9e-05 | 96 | 136 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ + s ++eL +lP+ + +++ sK ei+ A e +k+L+ Sobic.008G116800.2.p 96 RRTVSSLYAELGAMLPNlP---TDRAASKEEIVDAAAERVKMLE 136 788999***********55...7777************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.007 | 83 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-6 | 93 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPAMSRPDPA RPDRVSSPSL PRRRDQTDAL PLVHNCSSKT PPAAHTRRSA MDGQGGGGWL 60 PLDLSLATAG DLSLATAGPS ASASAGERRP RPRPNRRTVS SLYAELGAML PNLPTDRAAS 120 KEEIVDAAAE RVKMLEDTVA VLETYRAVRS PAAAAAGRRQ PEVSVAVGAV CFCARLPARS 180 PGALARALEA FHRRGVEVLV ATVGRHGHGQ GAAVLTVTAA AAPPEVLEMI RADIAAIY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G116800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965379 | 1e-109 | EU965379.1 Zea mays clone 285663 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443294.2 | 1e-166 | uncharacterized protein LOC8065952 | ||||
TrEMBL | A0A1B6PE79 | 1e-165 | A0A1B6PE79_SORBI; Uncharacterized protein | ||||
STRING | Sb08g017040.1 | 1e-127 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 | Representative plant | OGRP12068 | 2 | 3 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G116800.2.p |