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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.008G112200.1.p |
| Common Name | Sb08g016620, SORBIDRAFT_08g016620 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
MYB |
| Protein Properties |
Length: 419aa MW: 45137.2 Da PI: 7.0426 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.008G112200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl
Sobic.008G112200.1.p 26 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 73
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
Sobic.008G112200.1.p 79 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 122
89********************.*********.***********97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MRKPECPAAA NSGNAGGAAA ATKLRKGLWS PEEDERLVAY MLRSGQGSWS DVARNAGLQR 60
CGKSCRLRWI NYLRPDLKRG AFSPQEEELI VSLHAILGNR WSQIAARLPG RTDNEIKNFW 120
NSTIKKRLKN TSATSSPAAT ECASPEPNNK VAAGSCPDLA GLDHQDGGHH HHHHLMTTTT 180
TGLWMVDSSS SCTSSTSPMH QRQPPPTTAI MAAAAVAATR SYGGLVPFPD QLRGVMADAS 240
PPGRFFHGHA APPFKHQVAA LHHGGFYGST PPHHHGMMAT MEGGGCFMRG EDMFVGVVPP 300
LLDPMSAAAQ EQEQGQQGLM ASSGSNNAKN NNNSNNTTET TTTTTLSNNE SNITENNTNT 360
KDNINTISQV NNGSNVAAVF WEGAHQQYMS RNVMHGEWDL EELMKDVSSL PFLDFQVE*
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