PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G108800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 813aa    MW: 92553.6 Da    PI: 9.822
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G108800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.61.7e-17139218190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn Y+ evGF +r+s+ +++  n  +tk++++Cs+eg +++ k +         + rtgCka++++ + kd+ w++++  +eHnH+l
  Sobic.008G108800.2.p 139 EFYNLYSWEVGFGIRTSRGRTN-SNSYTTKKDLCCSCEGMSRNPKAA---------SCRTGCKAMIRLLRLKDHSWYISRSITEHNHSL 217
                           6****************99988.6666*************9998766.........9*******************************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.008G108800.2.p 218 S 218
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-14139218IPR004330FAR1 DNA binding domain
PfamPF105512.3E-27340432IPR018289MULE transposase domain
PROSITE profilePS509669.829621655IPR007527Zinc finger, SWIM-type
PfamPF044348.0E-5626654IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-4630657IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MFDTASTAAV LAATCGEGAW ADETFRRDSG EVDGFGGRLN GPPMVVGIEG DTGEQGGIGS  60
STVTMQATGG APAGRNERLT TSYDCKKRKR GMSGPDAKIA PTEESALSRA IKSSIDRKSE  120
AIFFPYEGTR FNSFEEAKEF YNLYSWEVGF GIRTSRGRTN SNSYTTKKDL CCSCEGMSRN  180
PKAASCRTGC KAMIRLLRLK DHSWYISRSI TEHNHSLSAT CGEKKQWLSH SEIDPLTKDF  240
IRKLRENNVT TGRVCNILGT SRGVGGFPVR REVIRSVCAR LAQHNIEDDI SKTLTLLDKM  300
KVDDPMMVVR YKVDEGGRIV HMLWCTGKNQ QNYDRFGDAM TFDTTYRTNL YNMPFGLFVR  360
VNNHFQSVVF GGVLLTSEKT EDFEWAFANF KDIMKGKEPM TILTDQCQAM AAAIKTTLQT  420
SRHRWCKWHV LRKAKQWLGN VYTKNTGFKS EFNKLVTEEV SIIKFERRWR QLVRKYGVEK  480
NKYLKRIYKH RGMWARPYFM HVFCAGMTST QRSESANHML KGFIQRSAPM HIFVSKFNEF  540
QNDRIAQEEK EIHVTKQMKR KRRIGVPIER HAEEIYTRAM YDRLYNELYH AGSYLIKGRG  600
ADEAYILVHY KEDGATDEKL FLVKDSGNFI SCSCGLYNHV GMLCRHALKV LMHLDRTELP  660
SGNILARWRR DVACETGHVS GQGVETSSLE SATYIQKKLM VRRVLAKAGV ERTLDESGYK  720
EAMDALDKII SVRTTRVEEK KIELGETSEK PTSCPKRAVK KGRRQNTSLK SYKASLKEQN  780
KRKKYEEDEI SSTSDNEQVT GTRKTKALWE IE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G108800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321752.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R5Z40.0A0A1Z5R5Z4_SORBI; Uncharacterized protein
STRINGSb08g016320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-75FAR1-related sequence 5