PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G100100.1.p
Common NameSb08g015280, SORBIDRAFT_08g015280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 987aa    MW: 110852 Da    PI: 4.8433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G100100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-14853248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Sobic.008G100100.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                          78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Sobic.008G100100.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                           68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001675.87E-121053No hitNo description
PfamPF139215.2E-131070No hitNo description
SuperFamilySSF466897.55E-2133107IPR009057Homeodomain-like
CDDcd116592.07E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118314.1E-60405655IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEANDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT  240
TIEELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP  300
QISDHELEEI AKMGSAGDPA LADELGEGST ATRTLLASYS QTPRLGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KEIQTPNPMA TPLASPGPGV  420
TPRIGMTPSR EGHSFGLTPR GTPFRDELRI NEEVEMQDST KLELRRQAEL KKSLRSGFAS  480
IPQPRNEYQI VMPPITEDEA EEAEEKIEED MSDRLARERA EEQARQEALL RKRSKVLQRS  540
LPRPPAASVE IIRQSLIRSG ESRSRSTFVP PTSLEQADEL INEELLRLLE HDNAKYPLDE  600
KTQKEKKKGK RQQNGGALVP EIDDFDEDEL KEASSMVEEE IQYLRVAMGH ENESFEDFVK  660
AHDACQEDLM FFPTNNSYGL ASVAGNADKI SALQNEFETV KKRMDDEAKK ASRLEQKIKL  720
LTQGYQVRAG KLWSQVQDTF KQMDTAATEL ECFQELQKQE HLAASYRILN LTEEVNKQKA  780
LERTLQSRYG ELVSGFQRIQ EQLEEHKKQL KVQEAIEAEN RAQEEEVVAP NHAAVEEEDE  840
RKPLSSDEKS QQTNRATDEE AAGSKAITKD QMDVDSGNVD GGFVGPIPPA PDTEGDNDEV  900
SVQDNTSNTE SSECASTNDG ADKIDQAKLE GQDKADDSMA ADAGPQEGKD ELAPVGASIS  960
EENTTISLDQ AVSKEDEGSA PERSIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027933792Cell division cycle 5-like protein
5xjc_L0.027933792Cell division cycle 5-like protein
5yzg_L0.027933792Cell division cycle 5-like protein
5z56_L0.027933792Cell division cycle 5-like protein
5z57_L0.027933792Cell division cycle 5-like protein
5z58_L0.027933792Cell division cycle 5-like protein
6ff4_L0.027933792Cell division cycle 5-like protein
6ff7_L0.027933792Cell division cycle 5-like protein
6icz_L0.027933792Cell division cycle 5-like protein
6id0_L0.027933792Cell division cycle 5-like protein
6id1_L0.027933792Cell division cycle 5-like protein
6qdv_O0.027933792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRHRKRKRK
2199204RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.94760.0callus| panicle| pollen| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G100100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4589620.0AF458962.1 Zea mays CDC5 protein (CDC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442159.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLC5YNT70.0C5YNT7_SORBI; Uncharacterized protein
STRINGSb08g015280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]