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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.008G083200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 386aa MW: 40845.6 Da PI: 7.4298 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.008G083200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 68.4 | 1.2e-21 | 288 | 350 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
Sobic.008G083200.1.p 288 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRADVLKQENASLRDEVNRIRKEYEELLSKN 350
89**********************************************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MGSSGADTPS KTTKASAPQE QQPPATSGAA TPAVYPDWSS FQAYPPIPPH GFFPSPVASS 60 PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTPYAIT SPNGNADATG 120 TTAAAGDTDG KPSEGKDKSP TKRSKGSLGS LNMLTGKNTG EHGKTSGASA NGATSQSGES 180 GSDSSSEGSE ENSHNDSHHK ESGQEQDGDV RSSQNGASRS PSEGKLNQAM TIVPMPSSGP 240 VTGPTTNLNI GMDYWANTAS SAPAIHGKVT PTTVPGAVVP AEQWIQDERE LKRQRRKQSN 300 RESARRSRLR KQAECEELAQ RADVLKQENA SLRDEVNRIR KEYEELLSKN NSLKEKLEGK 360 QHKTDEAGLN NKLQHSGDDS QKKGN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 304 | 310 | RRSRLRK |
2 | 304 | 311 | RRSRLRKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034769 | 0.0 | BT034769.2 Zea mays full-length cDNA clone ZM_BFb0017D08 mRNA, complete cds. |
GenBank | BT060689 | 0.0 | BT060689.1 Zea mays full-length cDNA clone ZM_BFb0034I13 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G32150.1 | 5e-78 | basic region/leucine zipper transcription factor 68 |