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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G073400.1.p | ||||||||
Common Name | Sb08g006510, SORBIDRAFT_08g006510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | DBB | ||||||||
Protein Properties | Length: 246aa MW: 24674.9 Da PI: 4.8852 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.5 | 4.1e-06 | 5 | 45 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +e+ e+ C ++ lC++C + H+ H+v Sobic.008G073400.1.p 5 CDACERAEAAVLCCADEAALCRSCDAAVHSAnklaarhHRV 45 *****************************668888895655 PP | |||||||
2 | zf-B_box | 25 | 4e-08 | 78 | 117 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++ek +fC +++ llC+ C ++ H H Sobic.008G073400.1.p 78 PACDICQEKTGYFFCLEDRALLCRPCDVAVHAAgvhvssH 117 67****************************9656744445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.36E-6 | 5 | 47 | No hit | No description |
SMART | SM00336 | 4.2E-7 | 5 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.3E-12 | 75 | 122 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.93 | 75 | 122 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.42E-7 | 78 | 122 | No hit | No description |
Pfam | PF00643 | 3.5E-6 | 78 | 116 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKIGCDACER AEAAVLCCAD EAALCRSCDA AVHSANKLAA RHHRVALLPS STAHPPSSTS 60 PIADDGSGSG GGGGDGHPAC DICQEKTGYF FCLEDRALLC RPCDVAVHAA GVHVSSHRRF 120 LITGVRVGDV ESLSHGVPGS DGGASPSTTS SGNGSSNAPG SSSGGGNPTT TTTTTTMPDQ 180 VRPSSSSSIR ATAATTAEGS PGQWQQWLWS DFLADDVGGG GGVDMEEECC HAELSEPGSS 240 GLTRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G073400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067820 | 6e-53 | AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence. | |||
GenBank | AL954853 | 6e-53 | AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 6e-53 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 6e-53 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441993.1 | 1e-176 | B-box zinc finger protein 24 | ||||
Swissprot | Q9SYM2 | 5e-42 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | C5YTM3 | 1e-174 | C5YTM3_SORBI; Uncharacterized protein | ||||
STRING | Sb08g006510.1 | 1e-175 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-32 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G073400.1.p |
Entrez Gene | 8054973 |