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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.008G069200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
M-type_MADS |
Protein Properties |
Length: 173aa MW: 20011.4 Da PI: 9.6999 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.008G069200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 35.9 | 9.5e-12 | 76 | 122 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHH.HH.HHHHT-EEEEEEE-TTSEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAe.EL.SvLCdaevaviifsstgkly 47
+en++ +tf+ Rrng+lKKA+ EL vLC a va+i++ s+ +++
Sobic.008G069200.1.p 76 VENNTSWPITFCMRRNGLLKKAYdELfAVLCYAVVALIVVFSSRRVR 122
68999999**************856659********99976655554 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MSSALSSSIC YAVVALIVVF SSRGRLYERV RQQQVMSSPV EWTSFQTVGI SFLLWWLLSA 60 EIFNMGRGRI ENKRVVENNT SWPITFCMRR NGLLKKAYDE LFAVLCYAVV ALIVVFSSRR 120 VRLYERVRQQ VMSSPMNWMS FRTLLVGYFL VWSILPVESV ISDWEFYCGK ET*
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Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |