PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G059300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 273aa    MW: 28337.9 Da    PI: 9.1769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G059300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.61.7e-09771042855
                   AP2  28 rkrfslgkfgtaeeAakaaiaarkkleg 55 
                            kr +lg+f+taeeAa+ ++aa+++++g
  Sobic.008G059300.1.p  77 GKRRWLGTFDTAEEAAAVYDAAALCIRG 104
                           399***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.85451112IPR001471AP2/ERF domain
SMARTSM003805.6E-1356118IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1273113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-1673113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVLLGLAKLR PKFSSPLGSA TYSDSSDECH HLLHQIGQPL PSSPAPPLPA KEPAIPRHAA  60
AAVGQVRGGD PRPGVAGKRR WLGTFDTAEE AAAVYDAAAL CIRGRRAVTN FPSSPAAVAL  120
APALAMPCST PSLAPEAETS SASTVVDTGA HRLHLLQLAA EERGASSSVA VWVEGGGLTS  180
ARHSGGFYGG DVVSHESRIE AEGRHQLSSR GTRQAKLGHS AVQAGKEEWT EMPAGSMGKS  240
GQRRFQTELA GPLGRDVGKS RKDTVVALVY IY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G059300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284949e-77KJ728494.1 Zea mays clone pUT6799 AP2-EREBP transcription factor (EREB155) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321628.11e-125ethylene-responsive transcription factor 5-like
TrEMBLA0A1B6PBQ50.0A0A1B6PBQ5_SORBI; Uncharacterized protein