PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G044000.1.p
Common NameSb08g003770, SORBIDRAFT_08g003770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 892aa    MW: 96916.3 Da    PI: 7.0686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G044000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696967331355
                           HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Sobic.008G044000.1.p 696 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 733
                           67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-296156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804683732IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-4696741IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGCC GHASCSAGSE APEEAGCEPG  60
TSVCTLVKKV MASQIHVVGE GAIGRAAFTG NHQWIVHDPA ANDHNLRPEV AAEMNHQFAA  120
GIQTIAIIPV LPRGVLQLGS TSVVVENTNL VLQYKKLCSQ LNNRSSMASS SSVKNDSNQK  180
VQSRPLNGPA SIYPADTRSK FLSGSPMTYQ QCYGPDGTTV SSSTLANMGS NASMLMVAQR  240
NGQVGREHIL YAPDMRFRPQ NPYCDRRVQS NTQSSVVSSG FISSISASME RHPLMTHSQQ  300
LEQGNTGEPS DPRNVLLKSL ARNPLVHENT NMTLLHGRGQ VPGFVNGHGG FDFLPEGTRV  360
VKGNLYGSTA NQILDQRCSS TSGMTGHRPT ISYKMPQSTQ FVRKTESPKR ETCQASAALS  420
SGSDIQVSGG LKTAISQENQ MSSSDLIGPK KANEVHDPTD AIVQAVKNMD RRRLLDISNE  480
RPPPLLMDPA AESDLFDMFG SEFHHLCHNV DNDLTWKAAK PESSNRDVPE SSVHLGSSPA  540
FNSVDDEFPY SGIFSLTDTD QLLDAVVSNA NPGGKQISGD SASCKTSVTD IPSTSYCRLK  600
EPKQSESSGA PLLIKNELAV SNFVKQTSFP EKAEDGCLSQ NNAIQKSQIR LWIESGQNMK  660
CESASASNSK GVDTSSKASR KRSRPGENPK PRPKDRQLIQ DRIKELRELV PNGAKCSIDA  720
LLEKTIKHML FLQSVTKHAD NLKDTNESKI LGGENGPLKD YFEGGATWAF DVGSQSMTCP  780
IIVEDLERPR QMLVEMLCED RGIFLEIADF IKGLGLTILR GVMEARKNKI WARFTVEANR  840
DVTRMEIFLS LMRLLEPSCD GSGAGENPNN NTKMPLGIVR YPVIPATGHL R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.123550.0embryo| leaf| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G044000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441863.10.0transcription factor LHW
TrEMBLC5YS760.0C5YS76_SORBI; Uncharacterized protein
STRINGSb08g003770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Representative plantOGRP152168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-51conserved peptide upstream open reading frame 7