PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G043900.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 313aa    MW: 32070.1 Da    PI: 7.0588
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G043900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.3e-14271311545
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                           +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L
  Sobic.008G043900.2.p 271 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNEEL 311
                           69************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-6267312IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.323269312IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.6E-14271312No hitNo description
PfamPF001701.1E-11271311IPR004827Basic-leucine zipper domain
CDDcd147072.96E-25271312No hitNo description
SuperFamilySSF579593.59E-10271312No hitNo description
PROSITE patternPS000360274289IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDPKDGERRG AARPGPGPLS RQGTRSVGWG GGLGKDFGSM NMDELLRSIW TAEESQAIAS  60
ASASAAGAGP VGDGGAALQR QGSLTLPRTL SVKTVDEVWR DFAREGPPGP TAGGAEPQPN  120
RQPTLGEMTL EEFLVRAGVV RDNPAAAAAA AAAAVSAQPV APRPIQAVNN GASIFLGNFG  180
GANDAGAGAM GFAPVGIGDQ AMGNGLMPGV PGMAGGAVTV VSPVDTSVAQ LDSMGKGNGD  240
LSSPMALVPY PFEGVIRGRR SGAGVEMVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE  300
VQKLKEQNEE LQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.214279e-32shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G043900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396520.0BT039652.1 Zea mays full-length cDNA clone ZM_BFc0037E11 mRNA, complete cds.
GenBankEU9647680.0EU964768.1 Zea mays clone 281458 bZIP transcription factor ABI5 mRNA, complete cds.
GenBankKJ7269430.0KJ726943.1 Zea mays clone pUT3489 bZIP transcription factor (bZIP68) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320780.11e-163bZIP transcription factor TRAB1-like isoform X2
SwissprotQ6ZDF31e-111TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLA0A1Z5R4Q70.0A0A1Z5R4Q7_SORBI; Uncharacterized protein
STRINGSb08g003760.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34000.33e-27abscisic acid responsive elements-binding factor 3
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]