PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G036900.1.p
Common NameSb08g003180, SORBIDRAFT_08g003180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 463aa    MW: 49369.7 Da    PI: 6.4512
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G036900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.4e-32273328156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           kpr++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Sobic.008G036900.1.p 273 KPRRCWAPELHRRFLQALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 328
                           79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.893269330IPR017930Myb domain
SuperFamilySSF466892.72E-17271331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-28272331IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-27273328IPR006447Myb domain, plants
PfamPF002492.1E-6275326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEMDPPPPPP LHADNRRRRR CREYLLALEE EERKIRVFQR ELPLCLDLVT QTIEEMRSHM  60
DSVVVGSEEE TVSDHGGGPV LEEFMPLKPT LSSSSSEDDD DDEHDSSRHH QHRAAGVGDD  120
DKKNDEASGD PETAAALASS RRPLLPQPET KKAMPDWLQS VQLWSNQQQP PPQQQHQDEL  180
LLPCRPVALN AYRKPGGAFQ PFEKDKDKEK QRGELPLPAS SSAAASSAVV GDSCCDRAGG  240
ATDTDTAENT NKLSIKGGKD KEAQSSSQAP GRKPRRCWAP ELHRRFLQAL QQLGGSHAAT  300
PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPNSTTAVAV QSGGTSVVAP PTAPQFVVVG  360
GIWVPPPEYA AAAAAAAAAA AAAAASQPQQ APHLASTGDA SGTPTATANK VYAPVATTLT  420
TPGLLQPRPE RQSSSCSGGR RSGDACSGSP AVSSSSSQTT SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.19260.0callus| ovary| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G036900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441840.10.0transcription factor NIGT1
SwissprotQ6Z8691e-107NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLC5YRS20.0C5YRS2_SORBI; Uncharacterized protein
STRINGSb08g003180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Representative plantOGRP54151221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-57G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]