PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G029000.2.p | ||||||||
Common Name | Sb08g002560, SORBIDRAFT_08g002560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 216aa MW: 24676.3 Da PI: 6.6009 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 59 | 9.4e-19 | 71 | 135 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 Dg +WrKYGqK++++s++pr+YYrC+++ gC+++k v+++++ p +++++Y+++H+++ Sobic.008G029000.2.p 71 DGRQWRKYGQKHINKSKHPRNYYRCAYRqeqGCKATKTVQQQDDstgtdHPVMFTVVYHDQHTCK 135 999************************98889********9975222214679**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-22 | 63 | 135 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-20 | 65 | 135 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-27 | 69 | 136 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-22 | 71 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.17 | 71 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAELQRHHQS DDGARARPDD VLVDDKKRVK RSISDDCISK EEDVVKPRHK QLKRGRFDES 60 MSLETPVPHY DGRQWRKYGQ KHINKSKHPR NYYRCAYRQE QGCKATKTVQ QQDDSTGTDH 120 PVMFTVVYHD QHTCKDNNGI NLGIDDSETN SQSSISTIST DPYGRETPSL DGNKLLDKSA 180 DLITRNSMYE PADMTVFEPL DLDSWALDAF LRFGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-13 | 71 | 135 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G029000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441803.2 | 1e-162 | probable WRKY transcription factor 62 | ||||
TrEMBL | A0A1Z5R5F6 | 1e-161 | A0A1Z5R5F6_SORBI; Uncharacterized protein | ||||
STRING | Sb08g002560.1 | 1e-161 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 | Representative plant | OGRP11474 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 1e-17 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G029000.2.p |
Entrez Gene | 8074855 |