PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G028600.1.p
Common NameSb08g002520, SORBIDRAFT_08g002520
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 342aa    MW: 36203 Da    PI: 5.2268
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G028600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY703.3e-22118182358
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE......EEEEEES--SS CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv......veitYegeHnh 58 
                           Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +k+ v+r+++d+         +++Y +eH++
  Sobic.008G028600.1.p 118 DGYQWRKYGQKQIEGAMYPRSYYRCTRSaeqGCAAKRTVQRNDDDGGGaaaapeYTVVYVSEHTC 182
                           9*************************988889***********9975311112246788888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-23101183IPR003657WRKY domain
SuperFamilySSF1182901.28E-20111183IPR003657WRKY domain
SMARTSM007744.2E-28116184IPR003657WRKY domain
PfamPF031064.7E-23118182IPR003657WRKY domain
PROSITE profilePS5081119.187118162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALQVVGREE ELLAQLRALL FLPSPAAAAT PAAPAAVKVE SAGGGSLMGS GGGGRRRRRL  60
QGSKRDRDDD SKAKDEQNQE ERAAATEPRH YSPPPCKRRK KKQQSKSKSL VTSVPDFDGY  120
QWRKYGQKQI EGAMYPRSYY RCTRSAEQGC AAKRTVQRND DDGGGAAAAP EYTVVYVSEH  180
TCTANDSLEA PVILETTTTV VAPSNSAATA NTTTYTDSIV VPTMSDHGSC STITITTGTE  240
SPAISGDDIT CWSSTSGGAS SSDYNYADDD YYYDCGGLFG AAVHGGGWAT GPADASSSSS  300
LLEMEDMNGP IRSPVHVPAV GWTIIDPLLL QLVNEPAVCH F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-151181821068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G028600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687203e-74BT068720.1 Zea mays full-length cDNA clone ZM_BFb0370C20 mRNA, complete cds.
GenBankJX4699143e-74JX469914.1 Zea mays subsp. mays clone UT3170 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441799.10.0probable WRKY transcription factor 54
TrEMBLC5YRA10.0C5YRA1_SORBI; Uncharacterized protein
STRINGSb08g002520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Representative plantOGRP1314045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.16e-15WRKY DNA-binding protein 54