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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.008G028600.1.p |
Common Name | Sb08g002520, SORBIDRAFT_08g002520 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 342aa MW: 36203 Da PI: 5.2268 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.008G028600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 70 | 3.3e-22 | 118 | 182 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE......EEEEEES--SS CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv......veitYegeHnh 58
Dgy+WrKYGqK+++g+ +prsYYrCt + gC +k+ v+r+++d+ +++Y +eH++
Sobic.008G028600.1.p 118 DGYQWRKYGQKQIEGAMYPRSYYRCTRSaeqGCAAKRTVQRNDDDGGGaaaapeYTVVYVSEHTC 182
9*************************988889***********9975311112246788888887 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MALQVVGREE ELLAQLRALL FLPSPAAAAT PAAPAAVKVE SAGGGSLMGS GGGGRRRRRL 60 QGSKRDRDDD SKAKDEQNQE ERAAATEPRH YSPPPCKRRK KKQQSKSKSL VTSVPDFDGY 120 QWRKYGQKQI EGAMYPRSYY RCTRSAEQGC AAKRTVQRND DDGGGAAAAP EYTVVYVSEH 180 TCTANDSLEA PVILETTTTV VAPSNSAATA NTTTYTDSIV VPTMSDHGSC STITITTGTE 240 SPAISGDDIT CWSSTSGGAS SSDYNYADDD YYYDCGGLFG AAVHGGGWAT GPADASSSSS 300 LLEMEDMNGP IRSPVHVPAV GWTIIDPLLL QLVNEPAVCH F*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068720 | 3e-74 | BT068720.1 Zea mays full-length cDNA clone ZM_BFb0370C20 mRNA, complete cds. |
GenBank | JX469914 | 3e-74 | JX469914.1 Zea mays subsp. mays clone UT3170 WRKY-type transcription factor mRNA, partial cds. |