PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G012800.2.p
Common NameSb08g001190, SORBIDRAFT_08g001190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 578aa    MW: 63384.9 Da    PI: 8.2969
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G012800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.34.9e-1061155691374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                           l++lL++cA  v++g + +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al ++  ++ +   + aa++ +++v 
  Sobic.008G012800.2.p 115 LINLLYQCAAEVAAGAFDRANFYLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTGGNSGEAHLVPAARRHLFDVL 203
                           6799*******************************99****************************99999989999999999******* PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                           P++k+++lt+N+aIlea+ege+ vH++D++  + +++QW+aL++a+  R++gpp+lR+T+v++     +e l +++  Lak Ae++++p
  Sobic.008G012800.2.p 204 PFMKLAYLTTNHAILEAMEGERFVHVVDLSgpAANPVQWIALFHAFRGRRGGPPHLRVTAVHD----GREFLANMAAVLAKEAEAFDIP 288
                           *****************************866899****************************....9********************* PP

                  GRAS 176 fefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.............................................. 214
                           f+f++ v+ +le+l++++L    rv++gEalaV++v qlhrll                                              
  Sobic.008G012800.2.p 289 FQFSA-VEAKLEELDTDALrhvlRVRSGEALAVSVVGQLHRLLavddaggrnsrhvpgsscltpvqiiarsspssfgelldrelntrlq 376
                           *****.7999****9999866667888************************************************************** PP

                  GRAS 215 .......................desvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpre 278
                                                  + +++ e+ +  ++L++v+ lsP+++vv+e ea+hn+++Flerf eal+yy++lfd+l  a+++++
  Sobic.008G012800.2.p 377 lspdssavlsmspqssslspahqQ-QQQREKaKLGSFLRAVRALSPTLMVVAEPEANHNAATFLERFEEALNYYASLFDCLeRASAAQA 464
                           *********************953.33333347899*********************************************54555444 PP

                  GRAS 279 s...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg....yrveee..sgsl 358
                           +    er+  Er +lg+ei+ vva egaer+erhe+l++W +r+e+aG++ v ls+  +++a+ ll+ +++ g    y+v ++   +++
  Sobic.008G012800.2.p 465 HrcaGERARAERLVLGEEIRGVVAREGAERKERHERLAQWARRMEAAGMERVGLSYAGMMEARKLLQSCGWGGgdyaYQVAHDagGEAF 553
                           47779*****************************************************************5445988888877434456 PP

                  GRAS 359 vlgWkdrpLvsvSaWr 374
                           +++W+++pL+svSaWr
  Sobic.008G012800.2.p 554 FFCWHRKPLYSVSAWR 569
                           6**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.01789543IPR005202Transcription factor GRAS
PfamPF035141.7E-103115569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MNSRPWHGAC LHCNICRHTK IQAQQWRARS PSYPEQRSID QKPRPSKASS LVRISIAHQA  60
GVWTLDMDMF VQEDTLSSAT SSPASSLYTP SPHGHGGLGS SWVQELSHDQ QGLRLINLLY  120
QCAAEVAAGA FDRANFYLEQ ITQLASLDAP HTLQRLAAVF ADALARKLLN LVPGLSRALL  180
STGGNSGEAH LVPAARRHLF DVLPFMKLAY LTTNHAILEA MEGERFVHVV DLSGPAANPV  240
QWIALFHAFR GRRGGPPHLR VTAVHDGREF LANMAAVLAK EAEAFDIPFQ FSAVEAKLEE  300
LDTDALRHVL RVRSGEALAV SVVGQLHRLL AVDDAGGRNS RHVPGSSCLT PVQIIARSSP  360
SSFGELLDRE LNTRLQLSPD SSAVLSMSPQ SSSLSPAHQQ QQQREKAKLG SFLRAVRALS  420
PTLMVVAEPE ANHNAATFLE RFEEALNYYA SLFDCLERAS AAQAHRCAGE RARAERLVLG  480
EEIRGVVARE GAERKERHER LAQWARRMEA AGMERVGLSY AGMMEARKLL QSCGWGGGDY  540
AYQVAHDAGG EAFFFCWHRK PLYSVSAWRP AAACRHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-251033207217Protein SCARECROW
5b3h_A9e-251033206216Protein SCARECROW
5b3h_D9e-251033206216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G012800.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750390.0EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301507.10.0scarecrow-like protein 3
TrEMBLA0A1B6PAT90.0A0A1B6PAT9_SORBI; Uncharacterized protein
STRINGSb08g001190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-111scarecrow-like 3