PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G004200.1.p
Common NameSb08g000510, SORBIDRAFT_08g000510
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 367aa    MW: 40268.3 Da    PI: 6.9677
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G004200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.87.9e-3182135255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           prlrWtpeLH +F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+
  Sobic.008G004200.1.p  82 PRLRWTPELHLCFLRAVDRLGGQDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 135
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.91578138IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2978136IPR009057Homeodomain-like
SuperFamilySSF466891.63E-1579136IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-2381137IPR006447Myb domain, plants
PfamPF002497.8E-983134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEKDSSKGFD DESSADHQVL PSVGDGEGDD AGGADDVPRA GHDGSSSNSS TVELDEAGGD  60
SGRKAAGASP SSVRPYVRSK NPRLRWTPEL HLCFLRAVDR LGGQDRATPK LVLQLMNVKG  120
LSIGHVKSHL QMYRSKKIDD SGQVVGNTGS WRDLHHQLHD GGQAYNFGHL SLHHGQTGAS  180
TILSARFGAW PHWNNFHDPS YLLHSRHLLG SKPYYSSTSE ADAFLRTRAQ YTARATSSTP  240
ACTLQRCLTY QNDQFIMNHH QRRLLHNEDN IHHDPLDLEL ALDIGPSRDK RIKRSLGCSW  300
GRHQEEENVE NQEVESATDD TQLSLSLLPS PSSVRTSSGG HHKVLGLNME KGTTHPTRTS  360
TLDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1783137357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1783137357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1783137357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1783137357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G004200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0684401e-125BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321607.10.0uncharacterized protein LOC8064764
TrEMBLC5YQ150.0C5YQ15_SORBI; Uncharacterized protein
STRINGSb08g000510.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-38G2-like family protein