PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G223200.2.p

Common Name

Dof22

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 266aa MW: 27579.6 Da PI: 6.1323

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G223200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	1e-37	50	106	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Sobic.007G223200.2.p 50 DPCPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSSS 106 68**************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	41	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.248	50	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	51	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MQEVSVEPGR RPAQQPHHQF AGVDLRRPKG YATAPVQEAT PAVKVAEGGD PCPRCASRDT 60 KFCYYNNYNT SQPRHFCKGC RRYWTKGGTL RNVPVGGGTR KKPSSSSYAA AAAAAADADN 120 KPPKKKPASK KRRVEAPVPE PAAAADASGV TDTVAAADSA KTTTTTTTTT TDGASEITTE 180 TEAAVAVAVP VAEEDSESLA HLLLQPGAEE AVSLGLGLSD FPSAAGKAVL DDDSFVWPAA 240 FDLGTCWASA GFADTDPASL FLNLP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.9318	0.0	root\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues examined.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G223200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582415	0.0	KC582415.1 Sorghum bicolor dof22 protein (dof22) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445972.2	0.0	dof zinc finger protein MNB1A
Swissprot	P38564	5e-98	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	E6PBM9	0.0	E6PBM9_SORBI; Dof-type zinc finger protein 22
STRING	Sb07g028850.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.007G223200.2.p

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392] Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]