PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NF-YC

Protein Properties

Length: 202aa MW: 21606.7 Da PI: 5.6093

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G219500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.3	4.7e-53	63	166	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql+ fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt Sobic.007G219500.1.p 63 QLQLFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVART 151 89****99999************************************************************************ PP NF-YC 87 difdflvdivprdel 101 ++fdflvdivprde Sobic.007G219500.1.p 152 EVFDFLVDIVPRDEA 166 ***********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.52E-30	71	157	IPR009072	Histone-fold
Pfam	PF00808	2.0E-21	85	148	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-36	86	163	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEPKSTTPPP PPVMGAPVAY PPPPGAAYPA GPYAHAPAAA LYPPPPPPPA PPTSQQGAAA 60 AQQLQLFWAE QYREIEATTD FKNHNLPLAR IKKIMKADED VRMIAAEAPV VFARACEMFI 120 LELTHRGWAH AEENKRRTLQ KSDIAAAVAR TEVFDFLVDI VPRDEAKEAD SAAAMGPAGI 180 PHPAAGLPAT DPMGYYYVQP Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-57	71	163	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G219500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU974115	0.0	EU974115.1 Zea mays clone 440194 nuclear transcription factor Y subunit C-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445949.1	1e-142	nuclear transcription factor Y subunit C-6
Swissprot	Q9XE33	2e-81	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	C5YJA9	1e-141	C5YJA9_SORBI; Uncharacterized protein
STRING	Sb07g028600.1	1e-141	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-63	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Sobic.007G219500.1.p
Entrez Gene	8067022

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]