PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G211000.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 466aa    MW: 49055.8 Da    PI: 6.9916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G211000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13395440655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Sobic.007G211000.3.p 395 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 440
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945389439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-16392452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-12393444No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15394452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-10395440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13395445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLFVSNNFNL FLDEQSRWPE ISNPYPSSIF LFILFSCAAG SEQKPPGELM YGSPVSKDLN  60
LPVQPPMTSS GLLRYRSAPS TVLGDLCEDL LPPAPGAGPP RDGADNVISR FLADHHHHIR  120
DDKPSPPPPP AAAPAHFPSA ADMASQQHQH QQMMFHSQSQ QQHMVDANKP GGLYRTVSSG  180
MEDAAGTGAG VGVGAASNLI RQSSSPAGFL DHFSMDNGYG AMLRASMGMG FRDGSGGVGG  240
AGGAATDSLA GGGGGGGSGS GRLKGQLSFS SRQGSLMSQI SEMDSEEIGG SSPEAAAGGR  300
GGYIPGYPMS SAGWDDSSSA LMSDSLSGMK RPRDSSEPGG QQQQQQQNGG GGLAHQFSLP  360
KTSSEMAAIE KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTKISERIR KLQELVPNMD  420
KQTNTSDMLD LAVDYIKDLQ KQVKALNESR ASCTCPASKH QQFSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.154898e-98callus| embryo| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G211000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569721e-164EU956972.1 Zea mays clone 1579149 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445905.20.0transcription factor bHLH130 isoform X1
TrEMBLA0A1Z5RB060.0A0A1Z5RB06_SORBI; Uncharacterized protein
STRINGSb07g027810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-53bHLH family protein