PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G211000.1.p
Common NameSb07g027810, SORBIDRAFT_07g027810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 417aa    MW: 43491.4 Da    PI: 7.6829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G211000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13346391655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Sobic.007G211000.1.p 346 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 391
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-16343403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-12344395No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15345403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10346391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STVLGDLCED LLPPAPGAGP PRDGADNVIS  60
RFLADHHHHI RDDKPSPPPP PAAAPAHFPS AADMASQQHQ HQQMMFHSQS QQQHMVDANK  120
PGGLYRTVSS GMEDAAGTGA GVGVGAASNL IRQSSSPAGF LDHFSMDNGY GAMLRASMGM  180
GFRDGSGGVG GAGGAATDSL AGGGGGGGSG SGRLKGQLSF SSRQGSLMSQ ISEMDSEEIG  240
GSSPEAAAGG RGGYIPGYPM SSAGWDDSSS ALMSDSLSGM KRPRDSSEPG GQQQQQQQNG  300
GGGLAHQFSL PKTSSEMAAI EKFLQFQDAV PCKIRAKRGC ATHPRSIAER VRRTKISERI  360
RKLQELVPNM DKQTNTSDML DLAVDYIKDL QKQVKALNES RASCTCPASK HQQFSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.154897e-98callus| embryo| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G211000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569721e-164EU956972.1 Zea mays clone 1579149 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320865.10.0transcription factor bHLH130 isoform X2
RefseqXP_021320866.10.0transcription factor bHLH130 isoform X2
RefseqXP_021320867.10.0transcription factor bHLH130 isoform X2
TrEMBLA0A1B6PJ110.0A0A1B6PJ11_SORBI; Uncharacterized protein
STRINGSb07g027810.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-54bHLH family protein