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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.007G210200.1.p |
| Common Name | Sb07g027740, SORBIDRAFT_07g027740 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
SBP |
| Protein Properties |
Length: 410aa MW: 42314.6 Da PI: 8.646 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.007G210200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 130.5 | 6.2e-41 | 95 | 170 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
+Cqv+gC++dl+++k y+ rhkvC++hsk p v+v+gleqrfCqqCsrfh+l efD+ k+sCrrrLa+hnerrr++
Sobic.007G210200.1.p 95 RCQVDGCNVDLTDVKPYYCRHKVCKMHSKEPRVVVNGLEQRFCQQCSRFHQLPEFDQLKKSCRRRLAGHNERRRRP 170
6*************************************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MESGGASGGG GGGGGDDQLH GLKFGKKIYF EDAAAAGSSS GGGGGGSGNA SATTAAPATQ 60
QPSPPQAASP RAASGGGGRR GRAAGGPSPA PAPARCQVDG CNVDLTDVKP YYCRHKVCKM 120
HSKEPRVVVN GLEQRFCQQC SRFHQLPEFD QLKKSCRRRL AGHNERRRRP PPGPLATRYG 180
RLAASFGEEP GRFRSFMLDF SYPRVPTAMR DGFPAVRPGE RAPGSIQWQA SLDPHHHQSA 240
VAGYSAHSYG SQGSSSSRPP VFPGPEIPPG GCLAGVPSDS SCALSLLSTQ PWDTTHSSGH 300
SHAASMPATA GFDGNPVAPS LMASSYIAPS PWTDSRGHEG GRNVPQLPPD VPLSEVHSGS 360
SSHHGQFSGE LELALQGNRP APGSAPAPRN DQGSTGAFDQ SGNTMDWSL*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Miura K, et al.
OsSPL14 promotes panicle branching and higher grain productivity in rice.
Nat. Genet., 2010. 42(6): p. 545-9
[PMID:20495564] - Jiao Y, et al.
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.
Nat. Genet., 2010. 42(6): p. 541-4
[PMID:20495565] - Springer N
Shaping a better rice plant.
Nat. Genet., 2010. 42(6): p. 475-6
[PMID:20502488] - Wang Y,Li J
Branching in rice.
Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9
[PMID:21144796] - Wang J,Kong L,Gao G,Luo J
A brief introduction to web-based genome browsers.
Brief. Bioinformatics, 2013. 14(2): p. 131-43
[PMID:22764121] - Luo L,Li W,Miura K,Ashikari M,Kyozuka J
Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.
Plant Cell Physiol., 2012. 53(10): p. 1793-801
[PMID:22960246] - Liu Q, et al.
The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
J Integr Plant Biol, 2015. 57(10): p. 819-29
[PMID:25677853] - Cruz-Garcia GS,Struik PC
Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1.
Econ. Bot., 2015. 69(2): p. 99-113
[PMID:26160981] - Srikanth B, et al.
Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.
Gene, 2016. 576(1 Pt 3): p. 441-50
[PMID:26519999] - Perignon M, et al.
Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial.
Nutrients, 2016.
[PMID:26751473] - Kim SR, et al.
Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
Rice (N Y), 2016. 9(1): p. 12
[PMID:26987543]
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