PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G209500.1.p
Common NameSb07g027680, SORBIDRAFT_07g027680
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 646aa    MW: 66893.8 Da    PI: 8.4477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G209500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-102372445
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHH CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwq 45
                          W t+E++ll++av+++G+ +W+++a +m           +t+  c++r++
  Sobic.007G209500.1.p 23 WGTWEELLLACAVRKHGTASWDSVAMEMLsrcppaaaDSLTPAGCRLRYR 72
                          ****************************9777788887778888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-41977IPR001005SANT/Myb domain
PfamPF002491.2E-82372IPR001005SANT/Myb domain
CDDcd001674.29E-52355No hitNo description
Gene3DG3DSA:1.20.920.103.5E-17292432IPR001487Bromodomain
SuperFamilySSF473703.27E-16293410IPR001487Bromodomain
SMARTSM002975.5E-13303413IPR001487Bromodomain
CDDcd043695.48E-14312408No hitNo description
PfamPF004396.1E-11318398IPR001487Bromodomain
PROSITE profilePS5001411.326322394IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAAGG EIWGTWEELL LACAVRKHGT ASWDSVAMEM LSRCPPAAAD  60
SLTPAGCRLR YRLLHRRFAA GAGSENDDGD EEPDAASADG CVEELRKLRV AELRREVERY  120
DLSIGSLQSK VERLKEERER SISVEANPPA VKEEDDEEEE PATGKGSLEE DDAGVGEDRV  180
SGGESGRSCK ESNSSDLKRP RTAQDAGGTA DAGDGDAAEA RGEDEGAGDA AAARESSAVK  240
REQASGESVA GSKDTPAEDA EKESSDVQSS ASPSRRREPE IAAGEDAEAE EASAPPPPAP  300
PPAPVLPASE AEALRAFLES VRTSKPGSVF ERRLESQDDA KYRSTIRRHV DLQTVRSRLD  360
GGAGSYASAT EFYRDLLLLC ANALVFYPRG SPEHSAAART RALVAKHMSK DQPAGTSGKA  420
AAGPGASKKA KAEADVGSLL EKTAPIIVCR KRSSIAKAAA KVETDDKEEQ QEAAVGKRKA  480
AAAANAKDRA ARGPRTTKTR GGPAVRKAAK AAAADNGSDS DAPPEEAKKQ PAADKKGGGS  540
GGAGVAKKRN AVNFLNRMKQ GGSAPSTERV SLLETLKLSA QAEQKKAGKG EGKKEPAGGS  600
GSGSKKTPPG RRNVGRPPKR AAAPPSPPPS KRAKGGGGGK RGGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G209500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856041e-168BT085604.1 Zea mays full-length cDNA clone ZM_BFc0038F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444768.10.0nucleolar and coiled-body phosphoprotein 1
TrEMBLC5YIR40.0C5YIR4_SORBI; Uncharacterized protein
STRINGSb07g027680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.15e-21DNA-binding bromodomain-containing protein