PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G182500.3.p
Common NameSb07g025270, SORBIDRAFT_07g025270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 493aa    MW: 52646.7 Da    PI: 7.4083
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G182500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.3e-11342400563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +a l +++
  Sobic.007G182500.3.p 342 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSAGLATQN 400
                           899*********************************************99998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-18338402IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852340403IPR004827Basic-leucine zipper domain
PfamPF001701.7E-9342400IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.7E-12342399No hitNo description
SuperFamilySSF579599.14E-12342393No hitNo description
CDDcd147031.31E-22343394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDDPGASADP AGAARHHLSP QQQQQLGGQP PVPRSPTPLD LASSSAAAAA SGYRRLSPSL  60
RPPAHPQAAR LPSPYGQIPS PGGAGAHHAR SLSQPLFFSL DSLPLPPPLP PYADLGAAPP  120
AIPPSPPPST SSDPHPPPPP PLGLPPRRAG HRRSQSDIPF GFAQLSPPLP PPAPVKREVT  180
TAADGCRSDG GGGDDAALYD LVNSYMDLDG LDPLNSSEDR HEDRDSRASG TRAGSAAESS  240
ENEAESQSTS VDRKDGGKSR HCRSLSMDSF MGKLNFAAGD ESPKLPLPSP GGSLTRSGSG  300
SMEGGAVALF DMEFANGEFT DSEKKKIMAN ERLAEIALTD PKRVKRILAN RQSAARSKER  360
KMRYIQELEH KVQVLQTEAT TLSAQLTMLQ RDSAGLATQN NELKIRLQAM EQQAQLRDAL  420
NEALTAEVQR LKLATGEITD GHGRMPKGLQ QQMNSQMLQL QQLQIQQQVP QTQQQQGQRQ  480
QQQQQQQPQK SA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G182500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0696230.0BT069623.1 Zea mays full-length cDNA clone ZM_BFb0192H19 mRNA, complete cds.
GenBankKJ7277390.0KJ727739.1 Zea mays clone pUT5680 bZIP transcription factor (bZIP43) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445762.10.0transcription factor RF2a
TrEMBLC5YH760.0C5YH76_SORBI; Uncharacterized protein
STRINGSb07g025270.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.39e-75bZIP family protein