PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G180300.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

HSF

Protein Properties

Length: 402aa MW: 42457.3 Da PI: 5.7051

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G180300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.5	2.8e-35	45	136	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+ Sobic.007G180300.2.p 45 FLTKTYQLVDDPAVDDVISWNDDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGE 124 9***************************************************************99.........******** PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++i+r+k Sobic.007G180300.2.p 125 KRLLCDIHRRKV 136 *******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.3E-38	36	129	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.1E-59	41	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.16E-35	42	134	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.8E-20	45	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-31	45	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-20	83	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	84	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-20	96	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAAEHAAAAV GEPPPPAATT TQPPAEGVTA APAAAAGQRS VPTPFLTKTY QLVDDPAVDD 60 VISWNDDGSA FIVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF 120 RRGEKRLLCD IHRRKVTAAT GAVTVAAAIP MALPVGSPVY SGEEQVLSSS SSPEPSLQQQ 180 PPAPSGSGSG GVPSGDVGEE NERLRRENAR LARELGQMKK LCNNILLLMS KYAATQQQPD 240 AAAAKQAAAA AGNCSGESAE ATAAAPPPPL PSILELLPSC RGDPAPDAAV ETAAAVGTEH 300 EVVEKAGARL FGVSIGRKRM RDESNGGVFE DYPASRAAEV KAEPVEAAHP DQRQQENNAT 360 EPVPQSWPIY RPRPVYHPLR ACNGSGSAGS DHDGSTNSRL N*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAAEHAAAAV GEPPPPAATT TQPPAEGVTA APAAAAGQRS VPTPFLTKTY QLVDDPAVDD  60
VISWNDDGSA FIVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF  120
RRGEKRLLCD IHRRKVTAAT GAVTVAAAIP MALPVGSPVY SGEEQVLSSS SSPEPSLQQQ  180
PPAPSGSGSG GVPSGDVGEE NERLRRENAR LARELGQMKK LCNNILLLMS KYAATQQQPD  240
AAAAKQAAAA AGNCSGESAE ATAAAPPPPL PSILELLPSC RGDPAPDAAV ETAAAVGTEH  300
EVVEKAGARL FGVSIGRKRM RDESNGGVFE DYPASRAAEV KAEPVEAAHP DQRQQENNAT  360
EPVPQSWPIY RPRPVYHPLR ACNGSGSAGS DHDGSTNSRL N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-27	36	140	12	125	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G180300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319939.1	0.0	heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	1e-141	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A1Z5RAH8	0.0	A0A1Z5RAH8_SORBI; Uncharacterized protein
STRING	Sb07g025120.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	3e-57	HSF family protein

Link Out ? help Back to Top
Phytozome	Sobic.007G180300.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]