PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G173200.1.p
Common NameSb07g024550, SORBIDRAFT_07g024550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 554aa    MW: 58119.8 Da    PI: 9.6691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G173200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0580102123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C+k F r  nL+ H r H
  Sobic.007G173200.1.p  80 FVCEVCNKGFQREQNLQLHRRGH 102
                           89*******************88 PP
2zf-C2H213.20.00027156178123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Sobic.007G173200.1.p 156 WKCDKCNKRYAVQSDWKAHSKTC 178
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-679102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.93E-779102No hitNo description
SMARTSM003550.004180102IPR015880Zinc finger, C2H2-like
PfamPF121713.6E-580102IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09480102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355300121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.93E-7151176No hitNo description
SMARTSM00355110156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MAAASSSAHL FGLGDAQMQM QQPPPPQQHQ HQHQQAAAPP PPNPAAPAPK KKRNQPGNPT  60
DPDAEVIALS PKTLLATNRF VCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNPKDVRRRV  120
YLCPEPTCVH HDPSRALGDL TGIKKHYCRK HGEKKWKCDK CNKRYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARVPPIGAG MYGTGGMALG LSGMAASHQL  240
QSFQDQAHSS ATTTIGSNPA AQFEHLMQPS TGSPAFRGAQ PTSSSSSPFY LGGAEDGHQS  300
QPSHSSLLHG NKQVYHGLMQ LPEQHQPGSN NGLLNLGFFS GGSGGQDARL VFPDQFNGAM  360
GGNVRGDGRE HGNSGANTES AAIFSGNLMG NQMASSAGFS SSLYNSSETV APPQMSATAL  420
LQKAAQMGAT TSSGNVNSLL RGLGNGGGTL NGRPAAGAAR FMAGESSSSR STSQAENESQ  480
FRDLMNTLAA SGSGAGTAFS GGFPGMDGSK LSTRDFLGVG GGGVMRSMGG AAGLPLRHGA  540
AGIGMGSLDP EMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34152214365Zinc finger protein JACKDAW
5b3h_F4e-34152214365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.17820.0embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G173200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9759570.0EU975957.1 Zea mays clone 506559 INDETERMINATE-related protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320417.10.0protein indeterminate-domain 5, chloroplastic isoform X1
TrEMBLA0A1B6PIA30.0A0A1B6PIA3_SORBI; Uncharacterized protein
STRINGSb07g024550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-110indeterminate(ID)-domain 4