PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G160400.1.p | ||||||||
Common Name | Sb07g023360, SORBIDRAFT_07g023360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 312aa MW: 31798.5 Da PI: 7.3 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.4 | 2.9e-32 | 75 | 128 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ +GghavDGCgEfm++ ge+g+++al+CaACgCHRnFHR+e++ Sobic.007G160400.1.p 75 TRYRECLKNHAVGIGGHAVDGCGEFMAA-GEDGSIDALRCAACGCHRNFHRKESD 128 79*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.3E-29 | 75 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-23 | 76 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-29 | 76 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.858 | 77 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.33E-20 | 234 | 309 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-32 | 237 | 310 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-25 | 248 | 304 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDFDEHDDGD EEMTPMPVSS SYDAPMQPAG LVAGLGGGGG GGTPKPGDSG GGSFRTPGGV 60 VVGGGVGGGA GGGGTRYREC LKNHAVGIGG HAVDGCGEFM AAGEDGSIDA LRCAACGCHR 120 NFHRKESDSP TGGGGADPAA AAALSPAAIT AYGAAAAHHH HHQFSPYYRT PAGYLLHQHQ 180 QLAAAAAGHM QMQRPLALPS TSHSGRVDEG DDMSGLIGPL VVAPMVGMSL GGSGGGGPSG 240 SGGSGSGKKR FRTKFTQEQK DRMLAFAERL GWRIQKHDEA AVQQFCEEVC VKRHVLKVWM 300 HNNKHTLGKK P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-28 | 249 | 306 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G160400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963277 | 0.0 | EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445649.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | A2YWA6 | 1e-123 | ZHD2_ORYSI; Zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6ZB90 | 1e-123 | ZHD2_ORYSJ; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | C5YMP0 | 0.0 | C5YMP0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g023360.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-30 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G160400.1.p |
Entrez Gene | 8083565 |
Publications ? help Back to Top | |||
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