 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.007G156700.1.p |
| Common Name | Sb07g023030, SORBIDRAFT_07g023030 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
ERF |
| Protein Properties |
Length: 293aa MW: 31545.3 Da PI: 6.6687 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.007G156700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 67.2 | 3.2e-21 | 152 | 201 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g
Sobic.007G156700.1.p 152 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDQAAIEFRG 201
8********.**********82....48************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MTNRAFSAMA ASHQSSYMIR FDGAHSDDPS PSSAGAEPPG PAQPQPQPQP PFAGRRMISP 60
EQEHQVIVAA LLHVVSGYTT PPPEVFPPPP PPTAACCQLC GMERCLGCEF FAAAGEGCLL 120
PATTALDGAG KAVAAATSAA PGQRRRRKKK NKYRGVRQRP WGKWAAEIRD PRRAVRKWLG 180
TFDTAEEAAR AYDQAAIEFR GPRAKLNFPF PEQLATGTGH DEASAAATTK SSDNTLSLSP 240
DERERERGQP EWLPSAGLGG QETGEQLWEG LQDLMKLDEG ELWFPPTSSA WN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU964453 | 1e-122 | EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds. |
| Publications
? help Back to Top |
- Matsuo M,Oelmüller R
REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
Plant Signal Behav, 2015. 10(11): p. e1051279
[PMID:26479402] - Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
J Vis Exp, 2018.
[PMID:26649488] - Bahieldin A, et al.
Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
BMC Plant Biol., 2016. 16(1): p. 216
[PMID:27716054] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:29112140] - Kong X, et al.
PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
Cell Rep, 2018. 22(5): p. 1350-1363
[PMID:29386120]
|
