PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G155900.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 365aa    MW: 37900.7 Da    PI: 6.9241
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G155900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.8e-15286338557
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                           +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ +
  Sobic.007G155900.3.p 286 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNEELQKKQEEIMEMQK 338
                           79*******************************************99999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.9E-15281334No hitNo description
SMARTSM003381.8E-13282346IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.484284335IPR004827Basic-leucine zipper domain
CDDcd147074.76E-27286340No hitNo description
PfamPF001703.0E-13286338IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-11286335No hitNo description
PROSITE patternPS000360289304IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDPKDGERMG AAGPGPLSRQ GSIYSLTFDE FQNTLGGMGG GLGKDFGSMN MDELLRSIWT  60
AEESQAIASA SASASASAAG AGAGPVGDGG AALQRQGSLT LPRTLSVKTV DEVWRDFARE  120
GPPGPTAGGA EPQPNRQPTL GEMTLEEFLV RAGVVRDNPA AAAAAAAAAV SAQPVAPRPI  180
QAVNNGASIF FGNFGGANDA GAGAMGFAPV GIGDQAMGNG LMPGVAGMAG GAVTVVSPVD  240
TSVAQLDSMG KGNGDLSSPM APVPYPFEGV IRGRRSGAGV EKVVERRQRR MIKNRESAAR  300
SRARKQAYTM ELEAEVQKLK EQNEELQKKQ EEIMEMQKNQ VLEVISNPYA QKKRCLRRTL  360
TGPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.214274e-34shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G155900.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396520.0BT039652.1 Zea mays full-length cDNA clone ZM_BFc0037E11 mRNA, complete cds.
GenBankEU9647680.0EU964768.1 Zea mays clone 281458 bZIP transcription factor ABI5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320779.10.0bZIP transcription factor TRAB1-like isoform X1
SwissprotQ6ZDF31e-153TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLA0A1Z5RB070.0A0A1Z5RB07_SORBI; Uncharacterized protein
STRINGSb07g022965.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.22e-33ABRE binding factor 4
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]