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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G148500.1.p | ||||||||
Common Name | Sb07g022265, SORBIDRAFT_07g022265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 24580.2 Da PI: 4.5172 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.4e-17 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g Sobic.007G148500.1.p 23 RYKGVRFRK-WGRWVSEIRMPNS---RERIWLGSYSSAEKAARAFDAAAVCLRG 72 7********.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-27 | 23 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 23 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-18 | 23 | 83 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-18 | 23 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.68 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-32 | 23 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDDGAGASRS DGEGSPRLPA ERRYKGVRFR KWGRWVSEIR MPNSRERIWL GSYSSAEKAA 60 RAFDAAAVCL RGSRAGSLNF PESPPNVRHI PGAMLTPEQI QAEAARHANQ LLPSPPVASP 120 AASSSSQPAA AGGASSDRTT LSMPPSTYYG SGAAVCGDDE ALDWSFMDAL PSMPASSMGM 180 GNSGADIVPA LDDFMYGSPH PVMPPSEEVT QDMIDDDDDH TFISDDLWRF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G148500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728382 | 0.0 | KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444464.2 | 1e-166 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A1B6PHV7 | 1e-165 | A0A1B6PHV7_SORBI; Uncharacterized protein | ||||
STRING | Sb07g022265.1 | 1e-162 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP14547 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 4e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G148500.1.p |
Entrez Gene | 8080636 |