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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G142700.1.p | ||||||||
Common Name | Sb07g021800, SORBIDRAFT_07g021800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | AP2 | ||||||||
Protein Properties | Length: 441aa MW: 47997.9 Da PI: 5.6801 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 6e-12 | 51 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d + ng ++k+ g ++ +e Aa+a++ a++k++g Sobic.007G142700.1.p 51 AYRGVTRHRWTGRFEAHLWDK-DarNGsRNKKGKQGAYDDEEAAARAHDLAALKYWG 106 69******************5.456779775555599******************98 PP | |||||||
2 | AP2 | 47.3 | 5.1e-15 | 149 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg+f t eeAa a++ a+ + +g Sobic.007G142700.1.p 149 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAVAYDIAAIEHRG 200 89****99**********988422...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-14 | 50 | 115 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-17 | 51 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-12 | 51 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.452 | 51 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-9 | 51 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 52 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.85E-23 | 149 | 210 | No hit | No description |
Pfam | PF00847 | 2.0E-9 | 149 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-17 | 149 | 210 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-26 | 150 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.767 | 150 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-18 | 150 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 190 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MARPRKNAGT DEDNPNAATG VSVTGKPPKL KRVRRKGEPR ESSTPSQRSS AYRGVTRHRW 60 TGRFEAHLWD KDARNGSRNK KGKQGAYDDE EAAARAHDLA ALKYWGPATV LNFPLCGYDE 120 ELREMEAQPR EEYIGSLRRR SSGFSRGVSK YRGVARHHHN GRWEARIGRV LGNKYLYLGT 180 FATQEEAAVA YDIAAIEHRG LNAVTNFDIS HYVNHWHRHC HGPSDDSLGV VVDDVAAFQL 240 PDDLPECPAA AIGVEETTGG DAEFHNGEEG YLQHHTSGPF GAQQQLPDET GALAAHQMAP 300 NSSALDMVLQ SPKFKELMEQ VSAAAAAVAS ESSIGGSMSS SSPSPSLSSF SPSPLQLPSP 360 SSLSSFSPSS PLQQPSPPLQ QPEFVEGAPA ARCSFPDDVQ TFFDFENESD MSFMYAEVDT 420 FLFGDLGAYA APIFHFDLDV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G142700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069847 | 0.0 | BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds. | |||
GenBank | KJ728211 | 0.0 | KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320137.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1Z5RAE8 | 0.0 | A0A1Z5RAE8_SORBI; Uncharacterized protein | ||||
STRING | Sb07g021800.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 6e-67 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G142700.1.p |
Entrez Gene | 8077856 |