PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G139200.1.p
Common NameSb07g021470, SORBIDRAFT_07g021470
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ZF-HD
Protein Properties Length: 391aa    MW: 40285.2 Da    PI: 7.0145
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G139200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.31.5e-323386557
           ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                          +Y+eClkNhAaslGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr  
  Sobic.007G139200.1.p 33 VYRECLKNHAASLGGHALDGCGEFMPSPEADpADPSSLRCAACGCHRNFHRRLA 86
                          7******************************9*******************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-16784IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-273385IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-303484IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.0683485IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.93E-16227293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28228294IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-21235291IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEGVVDLKYQ PVFPNGGVAA AAKKTARLGA AGVYRECLKN HAASLGGHAL DGCGEFMPSP  60
EADPADPSSL RCAACGCHRN FHRRLAELPP PPPLLTLPPP PPQPSLAALV PAPAAASHVM  120
RDSFTMRGEE TPDDRVPAAF DEETEEESDE GSDFDEDRPV SPLPVPALPP HGYRQQTAPA  180
PHMLLGLNTG VPSPGVQTPA VAPRPPPPPA SASLGPMPPA PPGTVVPGAA AAAARKRFRT  240
KFSPEQKQRM QALSERLGWR LQKRDEAVVD ECCQEMGVTK GVFKVWMHNN KHNFVGGHSA  300
RRSASASAAA AAAIHHHPSD AAAGAVYPSS SHGHAAAAPA AAPAAAVHHP SAPAAPVHAD  360
FNINGAAADA ADYFRVQPST ASGGGSPQSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-212352931775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.73517e-73embryo
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G139200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544241e-109BT054424.1 Zea mays full-length cDNA clone ZM_BFc0050F03 mRNA, complete cds.
GenBankBT0679041e-109BT067904.1 Zea mays full-length cDNA clone ZM_BFc0192B22 mRNA, complete cds.
GenBankJX4698991e-109JX469899.1 Zea mays subsp. mays clone UT3139 ZF-HD-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445555.10.0zinc-finger homeodomain protein 10
SwissprotQ6ER214e-73ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLC5YLA60.0C5YLA6_SORBI; Uncharacterized protein
STRINGSb07g021470.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-21homeobox protein 34