PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G135900.1.p
Common NameSb07g021170, SORBIDRAFT_07g021170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 393aa    MW: 40775.2 Da    PI: 5.4023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G135900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-15166212354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L +++e++k+L
  Sobic.007G135900.1.p 166 RSHSEAERRRRQRINSHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 212
                           78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.73E-15166215No hitNo description
PfamPF000101.7E-12166212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14167234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-15167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.55E-6263314No hitNo description
Gene3DG3DSA:3.30.70.2607.1E-8263318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MWEGGGIHGS HHEALLLQAA GSGAADYGHG GGGVPASLLP PWLGPAAAPG GFSSYAMAPH  60
HAHHLQPGPL GGAAESSFGF GDGGGGYSEE GGVGQFGVFG PETPLPLLPP HGLQALAAGG  120
SSGGTATALM PHGPRMVSGL LGTLQAELGR MTAKEIMDAK ALAASRSHSE AERRRRQRIN  180
SHLARLRSLL PNTTKTDKAS LLAEVIEHVK ELKRQTSAVL DGEGEEEEEP AAARQHLLLP  240
TEADDLAVDA AEDGDGRLVV RASLCCEDRV GLIPDIARAL AALRLRAHRA EIATLGGRVR  300
NVLLITTAAD DDQEEEEEEE EGGERQGDND REDCAGASLS NHRRHELVAS IQEALRGVMD  360
RKTASSDTSS SSGGGGSIKR QRMNGAHEQG SL*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: At the globular stage, expressed in cells adjacent to the hypophysis and at later embryonic stages, specific for vascular tissues. {ECO:0000269|PubMed:20220754}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G135900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445543.10.0transcription factor AIG1
SwissprotQ9LS086e-62BH032_ARATH; Transcription factor AIG1
SwissprotQ9S7Y17e-62BH030_ARATH; Transcription factor bHLH30
TrEMBLC5YL750.0C5YL75_SORBI; Uncharacterized protein
STRINGSb07g021170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Jost R, et al.
    Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
    J. Exp. Bot., 2015. 66(9): p. 2501-14
    [PMID:25697796]
  5. Vera-Sirera F, et al.
    A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
    Dev. Cell, 2015. 35(4): p. 432-43
    [PMID:26609958]
  6. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]