![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.007G135700.1.p | ||||||||
Common Name | Sb07g021140, SORBIDRAFT_07g021140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 258aa MW: 27475 Da PI: 6.6742 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.4 | 6.2e-35 | 79 | 216 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa 70 ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l++ ++ss+ Sobic.007G135700.1.p 79 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLVDAaepavalvsggpptvvkgrgeGNSSS 167 689************************************************************99999999999988888888655555 PP TCP 71 seceaesssssasnsssg..............................k 89 + c +++s+++a ++ + Sobic.007G135700.1.p 168 TCCLTVDSREEATEKARSrggggggtggpdgppalmeehgrgelgwimT 216 4444444444444332223445555555555555555444444444441 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.985 | 80 | 138 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-32 | 80 | 143 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MPSTAMSWDG YGGQIFPADM SSFHHQDTLE AVFRQPETTA PLQAPAAAGE MELLLRNGSP 60 VPVVDAGVHA AAAPRKRPFR TDRHSKIRTA QGVRDRRMRL SVGVAREFFA LQDRLGFDKA 120 SKTVNWLLTQ SKPAIDRLVD AAEPAVALVS GGPPTVVKGR GEGNSSSTCC LTVDSREEAT 180 EKARSRGGGG GGTGGPDGPP ALMEEHGRGE LGWIMTEATA AAAAATAQPQ QMDGLEYYYQ 240 YCLQLEEMMR CNGGMPR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-14 | 85 | 138 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-14 | 85 | 138 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.007G135700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 1e-166 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ727762 | 1e-166 | KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444387.1 | 0.0 | transcription factor TEOSINTE BRANCHED 1 | ||||
TrEMBL | C5YL71 | 0.0 | C5YL71_SORBI; Uncharacterized protein | ||||
STRING | Sb07g021140.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18550.1 | 5e-28 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.007G135700.1.p |
Entrez Gene | 8075661 |