PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G118301.1.p
Common NameSb07g019400, SORBIDRAFT_07g019400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 341aa    MW: 35622.7 Da    PI: 6.9795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G118301.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.1e-27131191259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dDg++WrKYGqK++ g+++pr+YYrCt++   +Cp++k+v+r+++ p +++++Y+geH+++
  Sobic.007G118301.1.p 131 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqNCPATKQVQRADDHPALFDVVYHGEHTCR 191
                           8***************************98999**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.022125193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-28125193IPR003657WRKY domain
SuperFamilySSF1182902.09E-25129193IPR003657WRKY domain
SMARTSM007745.0E-40130192IPR003657WRKY domain
PfamPF031064.4E-27131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADAVESGGR ALLVSELGRV QDLVRQLEQQ LRAPADAASV DLCRRLVHQI VALTDHSIGM  60
LRASPADLAP SPPLSATGSP ISGGDATSDH HHHHPFRAAG ASPKKRKATA RWTSQQVRVS  120
AAGGGAEGPA DDGHSWRKYG QKDILGAKHP RAYYRCTHRN SQNCPATKQV QRADDHPALF  180
DVVYHGEHTC RPPAAAGGSG GAKRAQQQQH NPHAQAALQG LAARLTVATT TAAAAAAAAA  240
ALPPMTPESC PVRGASSPWS PVGSDSNGCL QHQGVSPCPV PGYGDWAPEG DLQEVVSSAF  300
AAVSSAAPLP VLDDEFMSLE CFAFDHNFDI DTAMPSLYYP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-23131191969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G118301.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269070.0KJ726907.1 Zea mays clone pUT3452 WRKY transcription factor (WRKY25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444278.10.0probable WRKY transcription factor 41
TrEMBLA0A1Z5RAB50.0A0A1Z5RAB5_SORBI; Uncharacterized protein
STRINGSb07g019400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-28WRKY family protein