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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G109900.1.p | ||||||||
Common Name | Sb07g015450, SORBIDRAFT_07g015450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 177aa MW: 19571.1 Da PI: 9.5261 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.9 | 4.4e-13 | 37 | 94 | 3 | 60 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 elkr rr+++NRe+A+rsRqRK++ ++ L v++L + ++L l+ ++++ + + Sobic.007G109900.1.p 37 ELKRKRRMESNRESAKRSRQRKQQHLDDLNLQVDKLRTTKQQLMTALNITTQNYTAAE 94 79*****************************************988887777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.1E-13 | 35 | 99 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-10 | 37 | 86 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.082 | 37 | 100 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.85E-11 | 39 | 90 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-10 | 39 | 110 | No hit | No description |
CDD | cd14702 | 3.26E-16 | 40 | 90 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 42 | 57 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTLSGGTISS GTYSGSSHGT PSFGSEGGMV DLQARMELKR KRRMESNRES AKRSRQRKQQ 60 HLDDLNLQVD KLRTTKQQLM TALNITTQNY TAAEAQNSVL RTQMMELESR LCALREIICY 120 MNANHVANAA TTMNAHPATI MSGAANYNTF GTSATAWNSA MQMVQQPIDH LLYQCF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | KRSRQR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.18731 | 0.0 | leaf| root| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G109900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445402.1 | 1e-130 | bZIP transcription factor 11 | ||||
TrEMBL | C5YKC0 | 1e-129 | C5YKC0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g015450.1 | 1e-130 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 | Representative plant | OGRP10708 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 2e-24 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G109900.1.p |
Entrez Gene | 8069893 |