PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G092000.1.p
Common NameSb07g008550, SORBIDRAFT_07g008550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 293aa    MW: 29108.1 Da    PI: 6.2348
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G092000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.6e-061658542
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           C+ ++   +  +C  +   lC  C  + H        H++vpl
  Sobic.007G092000.1.p 16 ACAVCGGA-AAVYCAADAAALCGPCDAAVHAAnllasrHERVPL 58
                          5******9.*********************66899999999986 PP
2CCT68.71.5e-23195238144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Sobic.007G092000.1.p 195 REARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 238
                           9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-111258IPR000315B-box-type zinc finger
PROSITE profilePS501199.1861758IPR000315B-box-type zinc finger
PfamPF062035.3E-18195237IPR010402CCT domain
PROSITE profilePS5101716.638195237IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGSEGSTSPG GGGGAACAVC GGAAAVYCAA DAAALCGPCD AAVHAANLLA SRHERVPLSM  60
AAVAAASGVY DDLFAPDDID AASSWAAAAH ASPQNGSSST SFTTSDGGAE GRMSLFDLLS  120
DVDLAAACVT GGGVGGYLPD GVAPVHHHGA APLWAQPGLQ AAAWTATWSP ADAAAAAAVV  180
GVPGAAAVVA AAAEREARVQ RYREKRKNRK FQKTIRYASR KAYAEARPRI KGRFVKRAGT  240
SSSSSSGAGG TSDTNDATDA ASKFWLSFSD DGRDDGVGFY VDAGAYGVVP SF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G092000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683901e-112BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds.
GenBankKJ7278881e-112KJ727888.1 Zea mays clone pUT5981 orphans transcription factor (Orphan319) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445303.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLC5YJL40.0C5YJL4_SORBI; Uncharacterized protein
STRINGSb07g008550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Representative plantOGRP1297945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.16e-17CONSTANS-like 5