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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.007G085300.1.p |
Common Name | Sb07g006980, SORBIDRAFT_07g006980 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 319aa MW: 32979.3 Da PI: 10.3744 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.007G085300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99.7 | 1.8e-31 | 249 | 307 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D y+WrKYGqK++kgs++pr+YYrC+sa gCp++k+ver+a+dp ++++tYeg+H+h+
Sobic.007G085300.1.p 249 ADDYSWRKYGQKPIKGSPYPRGYYRCSSAkGCPARKHVERAADDPAMLVVTYEGDHRHD 307
69*************************999****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MAVDLMSSCG GRAGAYEQLA FQEAAAAGLR SLELLASSLS SPCGAGQRAE SPPLGQIADQ 60 AVSRFRRVIN LLDRTGHARF RRAPVAAVET ETTLQAAVEE PQPPQKKAAL TLDFTKPVPV 120 PAAAATKPAA PAPAPAVSGT STSFLSSVTA GGGGEGSVSK GCSLAVSSGK PPLPKRKLPC 180 PASAPQQAQA HQHQHQHQHL AESSAGRCHC SKKKRSRQGL SRRTVRVPAA AAAAGAPGSH 240 VPASSDIPAD DYSWRKYGQK PIKGSPYPRG YYRCSSAKGC PARKHVERAA DDPAMLVVTY 300 EGDHRHDAAA AAVRARAA*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU972665 | 1e-104 | EU972665.1 Zea mays clone 385560 WRKY25 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |