PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G063200.1.p
Common NameSb07g005060, SORBIDRAFT_07g005060
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 254aa    MW: 28380.1 Da    PI: 4.8064
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G063200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.32.9e-55771811102
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trt
  Sobic.007G063200.1.p  77 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRT 165
                           89******988889*************************************************************************** PP

                 NF-YC  87 difdflvdivprdelk 102
                           di+dflvdi+prde+k
  Sobic.007G063200.1.p 166 DIYDFLVDIIPRDEMK 181
                           *************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3356171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-3791163IPR009072Histone-fold
PfamPF008087.7E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEPSSQPQPV MGVGSQPYPA AASYAAPTMV AGAPAVPPGS QPAAQFPNPA QLSAQHQMVY  60
QQAQQFHHQL QQQQQQQLRE FWTTQMDEIE QTTDFKNHTL PLARIKKIMK ADEDVRMISA  120
EAPVVFAKAC EVFILELTLR SWMHTEENKR RTLQKNDIAA AITRTDIYDF LVDIIPRDEM  180
KEEGLGLPRV GLPPAMGAPA DHSSYPYYYV PAQQVPGAGM MYGGQQGQPM TYMWQKPQVP  240
EEEPSEEQQQ QSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-5984177295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G063200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416290.0BT041629.1 Zea mays full-length cDNA clone ZM_BFb0020N05 mRNA, complete cds.
GenBankEU9707120.0EU970712.1 Zea mays clone 349260 nuclear transcription factor Y subunit C-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443960.10.0nuclear transcription factor Y subunit C-4
RefseqXP_021320690.10.0nuclear transcription factor Y subunit C-4
RefseqXP_021320691.10.0nuclear transcription factor Y subunit C-4
RefseqXP_021320692.10.0nuclear transcription factor Y subunit C-4
RefseqXP_021320693.10.0nuclear transcription factor Y subunit C-4
RefseqXP_021320694.10.0nuclear transcription factor Y subunit C-4
SwissprotQ655V51e-114NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLC5YHY90.0C5YHY9_SORBI; Uncharacterized protein
STRINGSb07g005060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-71nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]