PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G061100.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 517aa MW: 56765 Da PI: 9.216

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G061100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	219	260	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 ++k +rr+++NReAAr+sR+RKka+i++Le+ k ++Le+e Sobic.007G061100.2.p 219 RDKIQRRLAQNREAARKSRLRKKAYIQNLETsrmKLAQLEQE 260 7899*************************9833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	29	No hit	No description
SMART	SM00338	0.0071	217	270	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-7	217	270	No hit	No description
Pfam	PF00170	3.0E-7	219	259	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	219	261	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-6	221	267	No hit	No description
PROSITE pattern	PS00036	0	224	239	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-28	313	387	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MKAAMQVGSF FLREMGSLLI NTCTWMASCV GKWCALWRRI LEHIYIWGAA LSFLLDWCIC 60 LTLPAHPYKK VDQVKHEMEL YPGYLQDHFN IHKLSRLATS GAAPGRYVTS GPAVGGGATA 120 MGIYERQRHL VAAGVSVWGE PFRPDADALP LSAVVPTVTL ATPPAPPLDV VEAEEVKFGK 180 HQLLQAQQYD FPPQVEEEAP PPSSDSFGHD HDDDAARPRD KIQRRLAQNR EAARKSRLRK 240 KAYIQNLETS RMKLAQLEQE LTMARRQQQQ QQHGAYGVGG GGGGVAAAAG ADPRVAAFEL 300 EYARWVEEQG RQATELRAAL QSHAPEVQLR VLVDAGLAHY GALFQAKAQA ARSDAFFVLS 360 GVWRAPAERF FLWIGGFRPS ELLKVLAPRL NPLMDHQAAE VRKLQNTARQ LEDALSQGMS 420 KLQQTLVDAL MTVDVASPLG AGGGYAAQQM ASAVGKLADL VDFVDKADHL RQQTLRNMHK 480 ILTPRQAARG LLALADYGQR LRALSSLWAA RPREPA*

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MKAAMQVGSF FLREMGSLLI NTCTWMASCV GKWCALWRRI LEHIYIWGAA LSFLLDWCIC  60
LTLPAHPYKK VDQVKHEMEL YPGYLQDHFN IHKLSRLATS GAAPGRYVTS GPAVGGGATA  120
MGIYERQRHL VAAGVSVWGE PFRPDADALP LSAVVPTVTL ATPPAPPLDV VEAEEVKFGK  180
HQLLQAQQYD FPPQVEEEAP PPSSDSFGHD HDDDAARPRD KIQRRLAQNR EAARKSRLRK  240
KAYIQNLETS RMKLAQLEQE LTMARRQQQQ QQHGAYGVGG GGGGVAAAAG ADPRVAAFEL  300
EYARWVEEQG RQATELRAAL QSHAPEVQLR VLVDAGLAHY GALFQAKAQA ARSDAFFVLS  360
GVWRAPAERF FLWIGGFRPS ELLKVLAPRL NPLMDHQAAE VRKLQNTARQ LEDALSQGMS  420
KLQQTLVDAL MTVDVASPLG AGGGYAAQQM ASAVGKLADL VDFVDKADHL RQQTLRNMHK  480
ILTPRQAARG LLALADYGQR LRALSSLWAA RPREPA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20434	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G061100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038664	0.0	BT038664.1 Zea mays full-length cDNA clone ZM_BFb0304N24 mRNA, complete cds.
GenBank	EU956720	0.0	EU956720.1 Zea mays clone 1571658 transcription factor TGA4 mRNA, complete cds.
GenBank	KJ727561	0.0	KJ727561.1 Zea mays clone pUT5421 bZIP transcription factor (bZIP107) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320829.1	0.0	transcription factor TGAL6 isoform X1
Refseq	XP_021320830.1	0.0	transcription factor TGAL6 isoform X1
Swissprot	A0A0P0WFC8	1e-123	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A1Z5R886	0.0	A0A1Z5R886_SORBI; Uncharacterized protein
STRING	Sb07g004900.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-94	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.007G061100.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]