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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.007G058300.1.p |
Common Name | Sb07g004655, SORBIDRAFT_07g004655 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 173aa MW: 18575.4 Da PI: 4.323 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.007G058300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 52 | 1.7e-16 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ + ++ g
Sobic.007G058300.1.p 27 EYLGVRRRP-WGRYAAEIRNPVT---KERHWLGTFDTAEEAAVAYDLSAISISG 76
588******.**********654...5*******************99988766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MADAPVAAAI MGVQDQQRRR RTRASSEYLG VRRRPWGRYA AEIRNPVTKE RHWLGTFDTA 60 EEAAVAYDLS AISISGPAAA RTNFYYPRDA TALQRQAELL PYDDAPVPSP APPPSPLSGG 120 SGGGTVDDDD YECQLTVEEA DADDESMTIA AILQSFQHLN NAPSASSADS LY*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK241762 | 6e-80 | AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence. |
GenBank | AP005164 | 6e-80 | AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03. |
GenBank | AP014964 | 6e-80 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | CP012616 | 6e-80 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |