PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G054400.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 845aa MW: 95889.9 Da PI: 7.4576

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G054400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84	2.4e-26	85	174	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA +vGFsvr+++s+ksk +++i++ +fvCs+eg+++e++ ++k+r++ a+ r gC+a+l+v ++ d+kw vtkl++eHnHe Sobic.007G054400.1.p 85 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSREGFSKEKRVVaaAKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHE 173 9*************************************99887666788889999*****************************9 PP FAR1 89 l 89 + Sobic.007G054400.1.p 174 V 174 5 PP
2	FAR1	60.1	6.8e-19	208	298	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ r +r gC+a +++ ++ +++w v+kl leH+He Sobic.007G054400.1.p 208 FYYSYASRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVRALDPSRDGCDALFEIIRKGKDTWTVSKLILEHTHE 295 9*****************9.6777*********99999995555666677789**************************** PP FAR1 89 lap 91 l+p Sobic.007G054400.1.p 296 LNP 298 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-24	85	174	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.8E-16	208	298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-18	399	490	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.569	678	714	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.4E-5	688	710	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-5	689	716	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHNVQIVDHQ AQPPLAAAVA QPQSVCRDLF 60 PVESDACLEP RLGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES IIMLRFVCSR 120 EGFSKEKRVV AAAKKTRKRP ASIREGCNAM LEVLRRGDSK WIVTKLVKEH NHEVGLPSRV 180 QYIAIESDTV VDPYIGMEFE SLESAKTFYY SYASRVGFEA RVRQSRKSQD ESLKMLKLVC 240 SRHRYHSGRE NNGEDTKRVR ALDPSRDGCD ALFEIIRKGK DTWTVSKLIL EHTHELNPAP 300 ASKVHCVRSQ GEVLVIANNF ADTRNLLLNG QDSQYPREMR YNDLGPEDAQ SLFEYLKKRQ 360 EEDPSFFYAV QHEMNGHNAN IFWADAKARM AYYHFGDAVR FETAYRKNKE TIPIVIFSGV 420 NHHVQPVVFG CALLLDDSEA SFTWLFEKWL EAMHMGPPVS LLSELNQGMT AAVAKVLPNT 480 HHIFCEKHIL DTMKEDLHGT CPDPEAFVTD LRKCIDGSRI EELFDSGWNS VIIKHELSNN 540 ELLQSLYDIR QQWAPAYTKK AFYPRNLMPT KCGSIEKAIE KYFSSKTELR VAVWQLGQAI 600 SSSFEAEVQA DYFTMFQMPA LSTASPVEKQ GSSIFTSTIF ALFQGQFVDS FGYHAERLDD 660 DTVHKYRVKR YEGDEEIHTV YFNPDRSTVN CSCCLFESCG ILCRHALRIF IIEGVRDLPK 720 AYILKRWTKH AKNIITSDNY TDLRGDHEDP STARFNDLCC HVVKFAKEGS KSSEIYAVAK 780 DALSKAFDEV VQSSKNFRGQ KNPQSYTMSL KRPIKKFGKA KDSSGKSSKR SASKNPLMES 840 DDVT*

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHNVQIVDHQ AQPPLAAAVA QPQSVCRDLF  60
PVESDACLEP RLGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES IIMLRFVCSR  120
EGFSKEKRVV AAAKKTRKRP ASIREGCNAM LEVLRRGDSK WIVTKLVKEH NHEVGLPSRV  180
QYIAIESDTV VDPYIGMEFE SLESAKTFYY SYASRVGFEA RVRQSRKSQD ESLKMLKLVC  240
SRHRYHSGRE NNGEDTKRVR ALDPSRDGCD ALFEIIRKGK DTWTVSKLIL EHTHELNPAP  300
ASKVHCVRSQ GEVLVIANNF ADTRNLLLNG QDSQYPREMR YNDLGPEDAQ SLFEYLKKRQ  360
EEDPSFFYAV QHEMNGHNAN IFWADAKARM AYYHFGDAVR FETAYRKNKE TIPIVIFSGV  420
NHHVQPVVFG CALLLDDSEA SFTWLFEKWL EAMHMGPPVS LLSELNQGMT AAVAKVLPNT  480
HHIFCEKHIL DTMKEDLHGT CPDPEAFVTD LRKCIDGSRI EELFDSGWNS VIIKHELSNN  540
ELLQSLYDIR QQWAPAYTKK AFYPRNLMPT KCGSIEKAIE KYFSSKTELR VAVWQLGQAI  600
SSSFEAEVQA DYFTMFQMPA LSTASPVEKQ GSSIFTSTIF ALFQGQFVDS FGYHAERLDD  660
DTVHKYRVKR YEGDEEIHTV YFNPDRSTVN CSCCLFESCG ILCRHALRIF IIEGVRDLPK  720
AYILKRWTKH AKNIITSDNY TDLRGDHEDP STARFNDLCC HVVKFAKEGS KSSEIYAVAK  780
DALSKAFDEV VQSSKNFRGQ KNPQSYTMSL KRPIKKFGKA KDSSGKSSKR SASKNPLMES  840
DDVT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G054400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320512.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021320514.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5R874	0.0	A0A1Z5R874_SORBI; Uncharacterized protein
STRING	GRMZM2G302323_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-122	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.007G054400.1.p