PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G049900.2.p
Common NameSb07g004030, SORBIDRAFT_07g004030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 319aa    MW: 33474.7 Da    PI: 9.4731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G049900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07257299343
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                           +WT+ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  Sobic.007G049900.2.p 257 AWTAGDDRALLNALKEFPKDtamRWEKVAASVP-GKTKAACMKR 299
                           6********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.796162209IPR017877Myb-like domain
SMARTSM007170.054166218IPR001005SANT/Myb domain
SuperFamilySSF466894.79E-7168211IPR009057Homeodomain-like
CDDcd001674.32E-5169211No hitNo description
PROSITE profilePS500906.922250304IPR017877Myb-like domain
SMARTSM007172.9E-6254306IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-9255305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-5256306IPR009057Homeodomain-like
PfamPF002491.0E-6257299IPR001005SANT/Myb domain
CDDcd001671.89E-7257304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEFIDPWDSQ TRARVVHSGA NSTSFSSTTT AKAPLSLPHA ASCAAAAVAL LAAAYYLPAA  60
YQILSSLLIW IASSLLLAPF APSWATGGDI SVGRGRVVPA PEPAPEPVSE PTPAPRRGRR  120
QNPAPTPTKP SDPVTPPVQS AASLHPLQKA TAAGGAVVDG GEREEDAGEW TDQDLELLRR  180
QMVKHPAGEP QRWEKIAAVF GGRRTPESVI RAAKSGAPAA GGSSFDQFLR KRKPLDPRAE  240
AADIGDNAGG AESADAAWTA GDDRALLNAL KEFPKDTAMR WEKVAASVPG KTKAACMKRV  300
TELKRDFRST KTASETAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G049900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9603090.0EU960309.1 Zea mays clone 223419 dnajc2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443901.10.0dnaJ homolog subfamily C member 2
RefseqXP_021320123.10.0dnaJ homolog subfamily C member 2
RefseqXP_021320124.10.0dnaJ homolog subfamily C member 2
RefseqXP_021320125.10.0dnaJ homolog subfamily C member 2
TrEMBLC5YHC80.0C5YHC8_SORBI; Uncharacterized protein
STRINGSb07g004030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-50MYB_related family protein