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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G047500.1.p | ||||||||
Common Name | Sb07g003880, SORBIDRAFT_07g003880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 27305 Da PI: 4.6693 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 85.6 | 4.4e-27 | 57 | 148 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvltpsdv+k++rlv+pk++ae++ +++l ++d g W+++++y+++s++yv+tkGW++Fv+a +L +gD+v+F++ + Sobic.007G047500.1.p 57 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFQDCGGALWQFRYSYWGSSQSYVMTKGWSRFVRAARLAAGDTVTFSRGAGGG 145 89************************555567789************************************************755466 PP E.. CS B3 90 fel 92 +++ Sobic.007G047500.1.p 146 GRY 148 655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-37 | 49 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-28 | 54 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.84E-25 | 55 | 140 | No hit | No description |
SMART | SM01019 | 5.7E-20 | 57 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-24 | 57 | 149 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.281 | 57 | 156 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MYMDLSLGTL VQDTQEVQEE DQEDNLDQQR AIGQDLHQQG GGGGGEPSHG VEREHMFDKV 60 LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFQDCGGA LWQFRYSYWG SSQSYVMTKG 120 WSRFVRAARL AAGDTVTFSR GAGGGGRYFI EHRHCQRRRR RDVDISFGDA ATTMPPWPIA 180 VGVQAMNGGA TMAVETASAA IAGTGHDSEV GPSAARSFRL FGFNVECSGD DAPAAPASAE 240 VEYVDVDGDD DYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-42 | 52 | 154 | 3 | 112 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-42 | 52 | 154 | 3 | 112 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.21297 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G047500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728410 | 1e-149 | KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443891.1 | 0.0 | putative B3 domain-containing protein Os08g0157700 | ||||
Swissprot | Q7EZD5 | 6e-75 | Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700 | ||||
TrEMBL | C5YHA5 | 0.0 | C5YHA5_SORBI; Uncharacterized protein | ||||
STRING | Sb07g003880.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14164 | 24 | 26 | Representative plant | OGRP14487 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 1e-44 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G047500.1.p |
Entrez Gene | 8069623 |